Results 141 - 147 of 147 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23562 | 5' | -49.5 | NC_005261.1 | + | 129218 | 0.67 | 0.993564 |
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Target: 5'- -------cUGCugGUGCGGC-GCCUc -3' miRNA: 3'- ccuuuuaaAUGugCACGCCGaCGGGc -5' |
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| 23562 | 5' | -49.5 | NC_005261.1 | + | 2808 | 0.67 | 0.994457 |
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Target: 5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3' miRNA: 3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5' |
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| 23562 | 5' | -49.5 | NC_005261.1 | + | 11948 | 0.67 | 0.994457 |
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Target: 5'- ---------cCGCG-GCGGCUcGCCCGg -3' miRNA: 3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5' |
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| 23562 | 5' | -49.5 | NC_005261.1 | + | 15163 | 0.67 | 0.994457 |
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Target: 5'- uGggGGUggGCguaGCGgcgGCGGC-GCCCGc -3' miRNA: 3'- cCuuUUAaaUG---UGCa--CGCCGaCGGGC- -5' |
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| 23562 | 5' | -49.5 | NC_005261.1 | + | 68785 | 0.67 | 0.994457 |
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Target: 5'- cGAAcuucgUGCAgGUGCGGCUcauCCCGc -3' miRNA: 3'- cCUUuuaa-AUGUgCACGCCGAc--GGGC- -5' |
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| 23562 | 5' | -49.5 | NC_005261.1 | + | 45617 | 0.67 | 0.994943 |
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Target: 5'- cGGcggcgcgGCGCGgcGCGGCggGCCCGc -3' miRNA: 3'- -CCuuuuaaaUGUGCa-CGCCGa-CGGGC- -5' |
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| 23562 | 5' | -49.5 | NC_005261.1 | + | 34036 | 0.66 | 0.997949 |
|
Target: 5'- --------gGCGCGgcgcGCGcGCUGCCCu -3' miRNA: 3'- ccuuuuaaaUGUGCa---CGC-CGACGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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