Results 101 - 120 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 90595 | 0.67 | 0.991432 |
Target: 5'- aGGAGGAcgcggUGCGCGcgGCGGCcgcggccGCCCc -3' miRNA: 3'- -CCUUUUaa---AUGUGCa-CGCCGa------CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 31647 | 0.67 | 0.991432 |
Target: 5'- aGGAGGAgc-GC-CGcGCGGCgGCCCc -3' miRNA: 3'- -CCUUUUaaaUGuGCaCGCCGaCGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 122448 | 0.67 | 0.994457 |
Target: 5'- --------cGCGCGgGCGGC-GCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 15032 | 0.67 | 0.994457 |
Target: 5'- ------cUUACGCG-GCGGCUggguccGCCCa -3' miRNA: 3'- ccuuuuaAAUGUGCaCGCCGA------CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 22010 | 0.68 | 0.989355 |
Target: 5'- uGGAAcGUgaugUACACGcuccuggagcgcuucUGCGGCgacgcGCCCa -3' miRNA: 3'- -CCUUuUAa---AUGUGC---------------ACGCCGa----CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 57700 | 0.66 | 0.997949 |
Target: 5'- --------aGCACGUGaCGGUgGCCUGg -3' miRNA: 3'- ccuuuuaaaUGUGCAC-GCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 18378 | 0.66 | 0.997949 |
Target: 5'- aGGGAGc---GCACGgucagggGCaGGCUGCCgGg -3' miRNA: 3'- -CCUUUuaaaUGUGCa------CG-CCGACGGgC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 28069 | 0.66 | 0.997549 |
Target: 5'- cGGggG----GCGCGgugGCGGCgGCCa- -3' miRNA: 3'- -CCuuUuaaaUGUGCa--CGCCGaCGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 84097 | 0.66 | 0.997549 |
Target: 5'- ---------cCGCGUGCGGCgUGCCg- -3' miRNA: 3'- ccuuuuaaauGUGCACGCCG-ACGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 59997 | 0.66 | 0.997549 |
Target: 5'- --------cGCACGccUGCGGCUGCUg- -3' miRNA: 3'- ccuuuuaaaUGUGC--ACGCCGACGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 6339 | 0.66 | 0.997417 |
Target: 5'- cGGGugcgcgccguCGCGUGCGGCggcgGCCg- -3' miRNA: 3'- -CCUuuuaaau---GUGCACGCCGa---CGGgc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 133932 | 0.66 | 0.997087 |
Target: 5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3' miRNA: 3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 136885 | 0.66 | 0.997087 |
Target: 5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3' miRNA: 3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 69461 | 0.66 | 0.997037 |
Target: 5'- -cGAAGUUcgACACG-GCGGCUccgcggcGCCCc -3' miRNA: 3'- ccUUUUAAa-UGUGCaCGCCGA-------CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 62975 | 0.66 | 0.996554 |
Target: 5'- cGAAGGccgagUACGC--GCGGUUGCCCa -3' miRNA: 3'- cCUUUUaa---AUGUGcaCGCCGACGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 31293 | 0.68 | 0.988779 |
Target: 5'- gGGccGAggUGCGCGUGUcgcuGGCgGCCCu -3' miRNA: 3'- -CCuuUUaaAUGUGCACG----CCGaCGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 44368 | 0.68 | 0.988779 |
Target: 5'- uGGAAGGagUGCGCGcgccucGUGGaCUGCUCGg -3' miRNA: 3'- -CCUUUUaaAUGUGCa-----CGCC-GACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 29206 | 0.68 | 0.988779 |
Target: 5'- -------cUGCGCGccacgGCGGCguucgGCCCGg -3' miRNA: 3'- ccuuuuaaAUGUGCa----CGCCGa----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 54638 | 0.68 | 0.988779 |
Target: 5'- cGGAGAGcg-ACGCGcUGCuGGCgGCCgCGg -3' miRNA: 3'- -CCUUUUaaaUGUGC-ACG-CCGaCGG-GC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 98612 | 0.68 | 0.988779 |
Target: 5'- gGGAGGGUcUGCGCGacggggGCGGCggggGCgCGc -3' miRNA: 3'- -CCUUUUAaAUGUGCa-----CGCCGa---CGgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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