Results 121 - 140 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 118416 | 0.66 | 0.995944 |
Target: 5'- uGAAcuUUUGCAuCGaccgGCGGCUGaCCCc -3' miRNA: 3'- cCUUuuAAAUGU-GCa---CGCCGAC-GGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 7653 | 0.66 | 0.996554 |
Target: 5'- cGGGGcc---GCGCG-GCGGCgcuuccGCCCGg -3' miRNA: 3'- -CCUUuuaaaUGUGCaCGCCGa-----CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 19828 | 0.66 | 0.996554 |
Target: 5'- --------aGCGCGgcUGCGGC-GCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGC--ACGCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 89190 | 0.67 | 0.994457 |
Target: 5'- -------gUGCuCG-GCGGCUGCCUGc -3' miRNA: 3'- ccuuuuaaAUGuGCaCGCCGACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 51801 | 0.67 | 0.994287 |
Target: 5'- uGGAccaccugGCgaugGCGUGCGGguuCUGCCCGc -3' miRNA: 3'- -CCUuuuaaa-UG----UGCACGCC---GACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 31953 | 0.67 | 0.993658 |
Target: 5'- cGGc--GUUUGCACGggccgcccggcggcaGCGGCggcggcgGCCCGg -3' miRNA: 3'- -CCuuuUAAAUGUGCa--------------CGCCGa------CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 22010 | 0.68 | 0.989355 |
Target: 5'- uGGAAcGUgaugUACACGcuccuggagcgcuucUGCGGCgacgcGCCCa -3' miRNA: 3'- -CCUUuUAa---AUGUGC---------------ACGCCGa----CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 37188 | 0.68 | 0.990176 |
Target: 5'- cGGAcGAgcacUACGcGCGGCUGCCgGc -3' miRNA: 3'- -CCUuUUaaauGUGCaCGCCGACGGgC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 78132 | 0.67 | 0.991192 |
Target: 5'- cGGGcgcgcugGCcaGCGUGCuGCUGCCCa -3' miRNA: 3'- -CCUuuuaaa-UG--UGCACGcCGACGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 31647 | 0.67 | 0.991432 |
Target: 5'- aGGAGGAgc-GC-CGcGCGGCgGCCCc -3' miRNA: 3'- -CCUUUUaaaUGuGCaCGCCGaCGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 90595 | 0.67 | 0.991432 |
Target: 5'- aGGAGGAcgcggUGCGCGcgGCGGCcgcggccGCCCc -3' miRNA: 3'- -CCUUUUaa---AUGUGCa-CGCCGa------CGGGc -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 134779 | 0.67 | 0.991432 |
Target: 5'- --------cGCGCGgcGCGGCgGCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCa-CGCCGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 67999 | 0.67 | 0.992452 |
Target: 5'- aGGucGAGUUUGCGC--GCGGCgccaacuccagcaUGCCCGu -3' miRNA: 3'- -CCu-UUUAAAUGUGcaCGCCG-------------ACGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 22361 | 0.67 | 0.992559 |
Target: 5'- aGGGAGAUUgccggGCGCGccucgGCGGggGCCgCGc -3' miRNA: 3'- -CCUUUUAAa----UGUGCa----CGCCgaCGG-GC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 135946 | 0.67 | 0.992559 |
Target: 5'- nGGGGAG---GCGCuG-GCGGCgccGCCCGg -3' miRNA: 3'- -CCUUUUaaaUGUG-CaCGCCGa--CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 137424 | 0.67 | 0.992559 |
Target: 5'- gGGAAGGggcGCGCGUgggggGCGGCgGCgCGg -3' miRNA: 3'- -CCUUUUaaaUGUGCA-----CGCCGaCGgGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 134842 | 0.67 | 0.992559 |
Target: 5'- cGGAAGugccgGCGCGgcugGCGGCcgcGCUCGc -3' miRNA: 3'- -CCUUUuaaa-UGUGCa---CGCCGa--CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 32306 | 0.67 | 0.993469 |
Target: 5'- cGGAGGgcgcggcGUggGCGCGcGCGaGCgGCCCGc -3' miRNA: 3'- -CCUUU-------UAaaUGUGCaCGC-CGaCGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 35260 | 0.67 | 0.993564 |
Target: 5'- --------cGCGCG-GCGGCggaGCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGa--CGGGC- -5' |
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23562 | 5' | -49.5 | NC_005261.1 | + | 77814 | 0.67 | 0.993564 |
Target: 5'- --------aGCGCG-GCGGCcccggGCCCGg -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGa----CGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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