Results 1 - 20 of 147 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 34036 | 0.66 | 0.997949 |
Target: 5'- --------gGCGCGgcgcGCGcGCUGCCCu -3' miRNA: 3'- ccuuuuaaaUGUGCa---CGC-CGACGGGc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 68785 | 0.67 | 0.994457 |
Target: 5'- cGAAcuucgUGCAgGUGCGGCUcauCCCGc -3' miRNA: 3'- cCUUuuaa-AUGUgCACGCCGAc--GGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 11948 | 0.67 | 0.994457 |
Target: 5'- ---------cCGCG-GCGGCUcGCCCGg -3' miRNA: 3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 129006 | 1.12 | 0.007951 |
Target: 5'- gGGAAAAUUUACACGUGCGGCUGCCCGu -3' miRNA: 3'- -CCUUUUAAAUGUGCACGCCGACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 97961 | 0.66 | 0.997549 |
Target: 5'- aGGGAGGUggcgGCGgaGCGG-UGCCCGg -3' miRNA: 3'- -CCUUUUAaaugUGCa-CGCCgACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 95159 | 0.66 | 0.997549 |
Target: 5'- cGGGAAcc-UGCA-GUGCGGCgagggggacgUGCCCc -3' miRNA: 3'- -CCUUUuaaAUGUgCACGCCG----------ACGGGc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 81970 | 0.66 | 0.997087 |
Target: 5'- --------aGCGCGguguucgGCGGCUGCgCGa -3' miRNA: 3'- ccuuuuaaaUGUGCa------CGCCGACGgGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 63840 | 0.66 | 0.997087 |
Target: 5'- --------gGCGCGccaccUGCaGCUGCCCGa -3' miRNA: 3'- ccuuuuaaaUGUGC-----ACGcCGACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 39719 | 0.66 | 0.996554 |
Target: 5'- gGGGAGGgggUUugGgGgGCGGgUGCCCc -3' miRNA: 3'- -CCUUUUa--AAugUgCaCGCCgACGGGc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 45617 | 0.67 | 0.994943 |
Target: 5'- cGGcggcgcgGCGCGgcGCGGCggGCCCGc -3' miRNA: 3'- -CCuuuuaaaUGUGCa-CGCCGa-CGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 135038 | 0.67 | 0.995247 |
Target: 5'- cGGcGAGgccgACGCcUGCGGCggcagcgGCCCGc -3' miRNA: 3'- -CCuUUUaaa-UGUGcACGCCGa------CGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 50475 | 0.66 | 0.996554 |
Target: 5'- cGAGGAcgcuCGCGUccGCGGCgGCCCc -3' miRNA: 3'- cCUUUUaaauGUGCA--CGCCGaCGGGc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 31775 | 0.66 | 0.997949 |
Target: 5'- -------cUGCGCGccGCGGUgcUGCCCGc -3' miRNA: 3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 106026 | 0.67 | 0.995247 |
Target: 5'- aGGAccGGAg--GCACGccacCGcGCUGCCCGg -3' miRNA: 3'- -CCU--UUUaaaUGUGCac--GC-CGACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 7195 | 0.66 | 0.997949 |
Target: 5'- aGGggGGggUGCGCGUGCguGGCaGCg-- -3' miRNA: 3'- -CCuuUUaaAUGUGCACG--CCGaCGggc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 32368 | 0.66 | 0.997087 |
Target: 5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3' miRNA: 3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 90190 | 0.67 | 0.995247 |
Target: 5'- gGGAGGAcgcagggaGCGCGgggGCGGCggagcGCCCu -3' miRNA: 3'- -CCUUUUaaa-----UGUGCa--CGCCGa----CGGGc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 15163 | 0.67 | 0.994457 |
Target: 5'- uGggGGUggGCguaGCGgcgGCGGC-GCCCGc -3' miRNA: 3'- cCuuUUAaaUG---UGCa--CGCCGaCGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 78833 | 0.66 | 0.997549 |
Target: 5'- cGGGAGcugcggUACGcCG-GCGGC-GCCCGc -3' miRNA: 3'- -CCUUUuaa---AUGU-GCaCGCCGaCGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 29415 | 0.66 | 0.997087 |
Target: 5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3' miRNA: 3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home