miRNA display CGI


Results 81 - 100 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 98612 0.68 0.988779
Target:  5'- gGGAGGGUcUGCGCGacggggGCGGCggggGCgCGc -3'
miRNA:   3'- -CCUUUUAaAUGUGCa-----CGCCGa---CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 31293 0.68 0.988779
Target:  5'- gGGccGAggUGCGCGUGUcgcuGGCgGCCCu -3'
miRNA:   3'- -CCuuUUaaAUGUGCACG----CCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 29206 0.68 0.988779
Target:  5'- -------cUGCGCGccacgGCGGCguucgGCCCGg -3'
miRNA:   3'- ccuuuuaaAUGUGCa----CGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 44368 0.68 0.988779
Target:  5'- uGGAAGGagUGCGCGcgccucGUGGaCUGCUCGg -3'
miRNA:   3'- -CCUUUUaaAUGUGCa-----CGCC-GACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 22943 0.68 0.988779
Target:  5'- --------gACGCGuUGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGC-ACGCCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 30916 0.68 0.988779
Target:  5'- uGGgcGAgcUGCACGcgGCGGCcugGCCgCGg -3'
miRNA:   3'- -CCuuUUaaAUGUGCa-CGCCGa--CGG-GC- -5'
23562 5' -49.5 NC_005261.1 + 54638 0.68 0.988779
Target:  5'- cGGAGAGcg-ACGCGcUGCuGGCgGCCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGUGC-ACG-CCGaCGG-GC- -5'
23562 5' -49.5 NC_005261.1 + 59073 0.68 0.987232
Target:  5'- cGGAGA----GCGCGcGCGGgUGCgCCGc -3'
miRNA:   3'- -CCUUUuaaaUGUGCaCGCCgACG-GGC- -5'
23562 5' -49.5 NC_005261.1 + 40722 0.68 0.987232
Target:  5'- cGAGGGgg-GCGCGUG-GGCguaGCCCa -3'
miRNA:   3'- cCUUUUaaaUGUGCACgCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 95935 0.68 0.986737
Target:  5'- uGGGAGGUgcugggcgacaucuCGCG-GCGGCUGCUgGg -3'
miRNA:   3'- -CCUUUUAaau-----------GUGCaCGCCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 68692 0.68 0.985526
Target:  5'- uGGggGccg-GCGCGgacgacgGCGGCgccgGCCCu -3'
miRNA:   3'- -CCuuUuaaaUGUGCa------CGCCGa---CGGGc -5'
23562 5' -49.5 NC_005261.1 + 134429 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 8812 0.68 0.985526
Target:  5'- gGGAuaGAAUacgcuuuaUUGCGCGUcGCGGCcgucucacaGCCCGg -3'
miRNA:   3'- -CCU--UUUA--------AAUGUGCA-CGCCGa--------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 6133 0.68 0.985526
Target:  5'- --------aGCGCGUcGCGGCcGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCA-CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 73533 0.68 0.985526
Target:  5'- -------gUGCGCG-GCGGCgGCCCc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 29912 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 108550 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 80676 0.68 0.983651
Target:  5'- cGGAGccgg-GCGCGUGCGaCgugUGCCCGu -3'
miRNA:   3'- -CCUUuuaaaUGUGCACGCcG---ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68955 0.68 0.983651
Target:  5'- cGGGGucg--GCGCGgGCGGCUcGCCgGg -3'
miRNA:   3'- -CCUUuuaaaUGUGCaCGCCGA-CGGgC- -5'
23562 5' -49.5 NC_005261.1 + 4032 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.