miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 126656 0.7 0.466758
Target:  5'- aCGGCGGgggGgGGGAAGgGGCaUGGc--- -3'
miRNA:   3'- -GCCGCCa--CgCCCUUCgCCG-ACCaagc -5'
23563 3' -60.6 NC_005261.1 + 102574 0.7 0.45775
Target:  5'- cCGGCaGGgaGCGGGAGcGgGGCUGGggCu -3'
miRNA:   3'- -GCCG-CCa-CGCCCUU-CgCCGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 22728 0.7 0.466758
Target:  5'- aGGUGGUGCGGGGgcuGCGGCg------ -3'
miRNA:   3'- gCCGCCACGCCCUu--CGCCGaccaagc -5'
23563 3' -60.6 NC_005261.1 + 121792 0.69 0.522591
Target:  5'- cCGGCGGgcuggGCaGGggGCgcguGGCUGGgcucugCGg -3'
miRNA:   3'- -GCCGCCa----CGcCCuuCG----CCGACCaa----GC- -5'
23563 3' -60.6 NC_005261.1 + 48798 0.69 0.532156
Target:  5'- aCGGCGGgcGCGGGGAGCccGGC-GGccgCGc -3'
miRNA:   3'- -GCCGCCa-CGCCCUUCG--CCGaCCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 105562 0.69 0.532156
Target:  5'- gCGGCGGgcgGCGGcGuuAGCGGCgcggGGggCu -3'
miRNA:   3'- -GCCGCCa--CGCC-Cu-UCGCCGa---CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 93679 0.69 0.522591
Target:  5'- gCGGCGGcgccgGCGGGgcGCcGGCgGGUg-- -3'
miRNA:   3'- -GCCGCCa----CGCCCuuCG-CCGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 98048 0.69 0.503666
Target:  5'- uGGCGGccgcgggcgGCGGGAccgcgGGCGGCgGGUg-- -3'
miRNA:   3'- gCCGCCa--------CGCCCU-----UCGCCGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 24371 0.69 0.531197
Target:  5'- uCGGCGGUGCucccgguGGGcucgucGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCACG-------CCCu-----UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 37331 0.69 0.521638
Target:  5'- gCGGCGGUGCGcGGcgaggccgcguacGAGgGGCUGcGcgCGc -3'
miRNA:   3'- -GCCGCCACGC-CC-------------UUCgCCGAC-CaaGC- -5'
23563 3' -60.6 NC_005261.1 + 97036 0.69 0.519734
Target:  5'- cCGGCcgcccacauccacaGG-GCGGGggGCGGCgGGcaCGa -3'
miRNA:   3'- -GCCG--------------CCaCGCCCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 12771 0.69 0.532156
Target:  5'- gCGGCGGUgGCGGGGggcucgucGGCGaGCUcGUcgUCGg -3'
miRNA:   3'- -GCCGCCA-CGCCCU--------UCGC-CGAcCA--AGC- -5'
23563 3' -60.6 NC_005261.1 + 69574 0.69 0.520686
Target:  5'- cCGGCGGcGCGGGcGGCGGUgacgaugaccucGGUcgCGg -3'
miRNA:   3'- -GCCGCCaCGCCCuUCGCCGa-----------CCAa-GC- -5'
23563 3' -60.6 NC_005261.1 + 55789 0.69 0.503666
Target:  5'- aCGGCGGcGCGGGGc-CGGCcgGGggCGc -3'
miRNA:   3'- -GCCGCCaCGCCCUucGCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 21625 0.69 0.502727
Target:  5'- gGGCGGUGCGaGGGcuGCGGCagcaucuuggcggUGGccUCGg -3'
miRNA:   3'- gCCGCCACGC-CCUu-CGCCG-------------ACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 44411 0.69 0.494315
Target:  5'- cCGGCGGcUGCGGcGGuGGCGGC-GGcgCGc -3'
miRNA:   3'- -GCCGCC-ACGCC-CU-UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 15027 0.69 0.513093
Target:  5'- uCGGCgGGUGcCGGGGgcguAGCGGggGGggUCGg -3'
miRNA:   3'- -GCCG-CCAC-GCCCU----UCGCCgaCCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 321 0.69 0.503666
Target:  5'- nGGCGGcUGCGGc-GGCGGCUGcggCGg -3'
miRNA:   3'- gCCGCC-ACGCCcuUCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 89592 0.69 0.526409
Target:  5'- gGGCGGgggccggcgcagggGCGGGGcguGgGGCUGGgcgCGg -3'
miRNA:   3'- gCCGCCa-------------CGCCCUu--CgCCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 128888 0.69 0.531197
Target:  5'- uCGGCGGUGCucccgguGGGcucgucGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCACG-------CCCu-----UCGCCGaCCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.