miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 55789 0.69 0.503666
Target:  5'- aCGGCGGcGCGGGGc-CGGCcgGGggCGc -3'
miRNA:   3'- -GCCGCCaCGCCCUucGCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 60397 0.69 0.503666
Target:  5'- uGGCGGcGagGGGggGCGGUggugcUGGggCGg -3'
miRNA:   3'- gCCGCCaCg-CCCuuCGCCG-----ACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 21625 0.69 0.502727
Target:  5'- gGGCGGUGCGaGGGcuGCGGCagcaucuuggcggUGGccUCGg -3'
miRNA:   3'- gCCGCCACGC-CCUu-CGCCG-------------ACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 37331 0.69 0.521638
Target:  5'- gCGGCGGUGCGcGGcgaggccgcguacGAGgGGCUGcGcgCGc -3'
miRNA:   3'- -GCCGCCACGC-CC-------------UUCgCCGAC-CaaGC- -5'
23563 3' -60.6 NC_005261.1 + 321 0.69 0.503666
Target:  5'- nGGCGGcUGCGGc-GGCGGCUGcggCGg -3'
miRNA:   3'- gCCGCC-ACGCCcuUCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 15027 0.69 0.513093
Target:  5'- uCGGCgGGUGcCGGGGgcguAGCGGggGGggUCGg -3'
miRNA:   3'- -GCCG-CCAC-GCCCU----UCGCCgaCCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 128361 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128304 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 28413 0.68 0.600558
Target:  5'- uCGGCGGccgccGCGgcGGAAGCGGCgccGGccgUCGc -3'
miRNA:   3'- -GCCGCCa----CGC--CCUUCGCCGa--CCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 56349 0.68 0.600558
Target:  5'- uGGCGGccGCaGGggGCGGgUGGg--- -3'
miRNA:   3'- gCCGCCa-CGcCCuuCGCCgACCaagc -5'
23563 3' -60.6 NC_005261.1 + 31889 0.68 0.600558
Target:  5'- gCGGCGGggGCGGacgcGGCGGCgGGgcCGu -3'
miRNA:   3'- -GCCGCCa-CGCCcu--UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 86193 0.68 0.590671
Target:  5'- gCGGCGG-GCGGGgcGgGcGUUGGccUCGu -3'
miRNA:   3'- -GCCGCCaCGCCCuuCgC-CGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 79687 0.68 0.590671
Target:  5'- aCGGCGcaggagccCGGGcGGCGGCUGGgcUCGa -3'
miRNA:   3'- -GCCGCcac-----GCCCuUCGCCGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 120885 0.68 0.590671
Target:  5'- gGGCGGggugcccggGCGGGgcGgGaGCUGGgcCGg -3'
miRNA:   3'- gCCGCCa--------CGCCCuuCgC-CGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 88697 0.68 0.561205
Target:  5'- uGGUGGccGCGGacGGCGGCUGGcccgCGa -3'
miRNA:   3'- gCCGCCa-CGCCcuUCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 138040 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 35305 0.68 0.580812
Target:  5'- gCGGCGGcgcUGCGcGAAGCGGCggaGGcgCu -3'
miRNA:   3'- -GCCGCC---ACGCcCUUCGCCGa--CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 37848 0.68 0.580812
Target:  5'- aCGGCGGcGUGguGGAGGCGGCcucGG-UCGc -3'
miRNA:   3'- -GCCGCCaCGC--CCUUCGCCGa--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 55756 0.68 0.590671
Target:  5'- aCGGCGGgGaCGGGGAcGgGGCcgGGggCGg -3'
miRNA:   3'- -GCCGCCaC-GCCCUU-CgCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 7961 0.68 0.589684
Target:  5'- uGGCGGgggcgcGCGGGAcgcccccaguacgAGCcGCUGGcgCGg -3'
miRNA:   3'- gCCGCCa-----CGCCCU-------------UCGcCGACCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.