miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 37848 0.68 0.580812
Target:  5'- aCGGCGGcGUGguGGAGGCGGCcucGG-UCGc -3'
miRNA:   3'- -GCCGCCaCGC--CCUUCGCCGa--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 35305 0.68 0.580812
Target:  5'- gCGGCGGcgcUGCGcGAAGCGGCggaGGcgCu -3'
miRNA:   3'- -GCCGCC---ACGCcCUUCGCCGa--CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 17711 0.68 0.580812
Target:  5'- uGGCGGUcGCGGaGAacucgggcAGCGGCgccgGGUa-- -3'
miRNA:   3'- gCCGCCA-CGCC-CU--------UCGCCGa---CCAagc -5'
23563 3' -60.6 NC_005261.1 + 104886 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 28413 0.68 0.600558
Target:  5'- uCGGCGGccgccGCGgcGGAAGCGGCgccGGccgUCGc -3'
miRNA:   3'- -GCCGCCa----CGC--CCUUCGCCGa--CCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 88697 0.68 0.561205
Target:  5'- uGGUGGccGCGGacGGCGGCUGGcccgCGa -3'
miRNA:   3'- gCCGCCa-CGCCcuUCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 38253 0.68 0.59759
Target:  5'- gGGCucgcacgccagccuGG-GCuGGggGCGGCUGGUgcacgCGg -3'
miRNA:   3'- gCCG--------------CCaCGcCCuuCGCCGACCAa----GC- -5'
23563 3' -60.6 NC_005261.1 + 56117 0.68 0.584752
Target:  5'- gCGGCGGgagcgcgccgcaggGCGGGggGCgcgGGCcgagGGUggCGg -3'
miRNA:   3'- -GCCGCCa-------------CGCCCuuCG---CCGa---CCAa-GC- -5'
23563 3' -60.6 NC_005261.1 + 128886 0.68 0.590671
Target:  5'- aGGCGGgggccggGUGGGAGGCgGGCg---UCGa -3'
miRNA:   3'- gCCGCCa------CGCCCUUCG-CCGaccaAGC- -5'
23563 3' -60.6 NC_005261.1 + 97627 0.68 0.590671
Target:  5'- gGGCGGaGCGGGcgGAGCgGGCgcgGGUg-- -3'
miRNA:   3'- gCCGCCaCGCCC--UUCG-CCGa--CCAagc -5'
23563 3' -60.6 NC_005261.1 + 23787 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 57190 0.68 0.600558
Target:  5'- uCGGCGGgaagGgGGGggGgGGCgcgcgGGUc-- -3'
miRNA:   3'- -GCCGCCa---CgCCCuuCgCCGa----CCAagc -5'
23563 3' -60.6 NC_005261.1 + 97750 0.68 0.600558
Target:  5'- gGGCGGgGCGGGcucGGCGGCgcggccGGcaUCGa -3'
miRNA:   3'- gCCGCCaCGCCCu--UCGCCGa-----CCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 48443 0.68 0.600558
Target:  5'- -cGCGGUGCGuGgcGCGGCcGGcgCGg -3'
miRNA:   3'- gcCGCCACGCcCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 69309 0.68 0.600558
Target:  5'- cCGGUGGcgGCGGG-AGCGGg-GGUgacggCGa -3'
miRNA:   3'- -GCCGCCa-CGCCCuUCGCCgaCCAa----GC- -5'
23563 3' -60.6 NC_005261.1 + 13700 0.68 0.580812
Target:  5'- gGGCGGgGCGGGcuGGgGGCgGGggUGg -3'
miRNA:   3'- gCCGCCaCGCCCu-UCgCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 34329 0.68 0.570989
Target:  5'- uGGCGGcGCGGGuGGCccGGCUuGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCCuUCG--CCGA-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 23844 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 55137 0.67 0.620392
Target:  5'- gCGGCGGcGCuGGAGGC-GCUGGaagCGc -3'
miRNA:   3'- -GCCGCCaCGcCCUUCGcCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 98249 0.67 0.610467
Target:  5'- gCGGCccGGUGCGGcGcgucAGGCGGCgcgcGcGUUCGa -3'
miRNA:   3'- -GCCG--CCACGCC-C----UUCGCCGa---C-CAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.