miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 24371 0.69 0.531197
Target:  5'- uCGGCGGUGCucccgguGGGcucgucGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCACG-------CCCu-----UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 12771 0.69 0.532156
Target:  5'- gCGGCGGUgGCGGGGggcucgucGGCGaGCUcGUcgUCGg -3'
miRNA:   3'- -GCCGCCA-CGCCCU--------UCGC-CGAcCA--AGC- -5'
23563 3' -60.6 NC_005261.1 + 105562 0.69 0.532156
Target:  5'- gCGGCGGgcgGCGGcGuuAGCGGCgcggGGggCu -3'
miRNA:   3'- -GCCGCCa--CGCC-Cu-UCGCCGa---CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 110801 0.69 0.532156
Target:  5'- aCGGCGG-GCGaGGAGGCGGggGcGgaCGg -3'
miRNA:   3'- -GCCGCCaCGC-CCUUCGCCgaC-CaaGC- -5'
23563 3' -60.6 NC_005261.1 + 48798 0.69 0.532156
Target:  5'- aCGGCGGgcGCGGGGAGCccGGC-GGccgCGc -3'
miRNA:   3'- -GCCGCCa-CGCCCUUCG--CCGaCCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 1044 0.69 0.532156
Target:  5'- gCGGCGGgcgGCGGcGuuAGCGGCgcggGGggCu -3'
miRNA:   3'- -GCCGCCa--CGCC-Cu-UCGCCGa---CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 127313 0.68 0.555357
Target:  5'- uGGCGGUggggcccugccgcccGCGGGGgccggAGCGGC-GGggCGc -3'
miRNA:   3'- gCCGCCA---------------CGCCCU-----UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 129648 0.68 0.561205
Target:  5'- aCGGUGGcgGCGGc-GGCGGCaGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 88697 0.68 0.561205
Target:  5'- uGGUGGccGCGGacGGCGGCUGGcccgCGa -3'
miRNA:   3'- gCCGCCa-CGCCcuUCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 138040 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 369 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 104886 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 34329 0.68 0.570989
Target:  5'- uGGCGGcGCGGGuGGCccGGCUuGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCCuUCG--CCGA-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 17711 0.68 0.580812
Target:  5'- uGGCGGUcGCGGaGAacucgggcAGCGGCgccgGGUa-- -3'
miRNA:   3'- gCCGCCA-CGCC-CU--------UCGCCGa---CCAagc -5'
23563 3' -60.6 NC_005261.1 + 13700 0.68 0.580812
Target:  5'- gGGCGGgGCGGGcuGGgGGCgGGggUGg -3'
miRNA:   3'- gCCGCCaCGCCCu-UCgCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128304 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128361 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 23844 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 37848 0.68 0.580812
Target:  5'- aCGGCGGcGUGguGGAGGCGGCcucGG-UCGc -3'
miRNA:   3'- -GCCGCCaCGC--CCUUCGCCGa--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 35305 0.68 0.580812
Target:  5'- gCGGCGGcgcUGCGcGAAGCGGCggaGGcgCu -3'
miRNA:   3'- -GCCGCC---ACGCcCUUCGCCGa--CCaaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.