Results 121 - 140 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23563 | 3' | -60.6 | NC_005261.1 | + | 35164 | 0.67 | 0.619399 |
Target: 5'- gCGGCGGUGCugggcgccgugccGGGAcaGGC-GCUGGgcccugCGg -3' miRNA: 3'- -GCCGCCACG-------------CCCU--UCGcCGACCaa----GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 125214 | 0.67 | 0.620392 |
Target: 5'- -cGUGGUGCuGGGggGCGcGCUcgGGcUCGc -3' miRNA: 3'- gcCGCCACG-CCCuuCGC-CGA--CCaAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 55137 | 0.67 | 0.620392 |
Target: 5'- gCGGCGGcGCuGGAGGC-GCUGGaagCGc -3' miRNA: 3'- -GCCGCCaCGcCCUUCGcCGACCaa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 97975 | 0.67 | 0.629331 |
Target: 5'- gGaGCGGUGCccgGGGAgagugaagugggaGGCGGCgGGggCGc -3' miRNA: 3'- gC-CGCCACG---CCCU-------------UCGCCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 105929 | 0.67 | 0.630324 |
Target: 5'- gCGGCGGcgGCGGG-GGCGGCg------ -3' miRNA: 3'- -GCCGCCa-CGCCCuUCGCCGaccaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 111602 | 0.67 | 0.630324 |
Target: 5'- -cGCGGaGUGGGc-GCGGCUGGgcugCGg -3' miRNA: 3'- gcCGCCaCGCCCuuCGCCGACCaa--GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 1412 | 0.67 | 0.630324 |
Target: 5'- gCGGCGGcgGCGGG-GGCGGCg------ -3' miRNA: 3'- -GCCGCCa-CGCCCuUCGCCGaccaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 38372 | 0.67 | 0.630324 |
Target: 5'- gGGCGGc-CGGGAAGCGGCacc-UCGu -3' miRNA: 3'- gCCGCCacGCCCUUCGCCGaccaAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 78525 | 0.67 | 0.630324 |
Target: 5'- cCGGCGG-GCGGGucugcccgGAGCGcguGCUGGccgagggcggcUUCGa -3' miRNA: 3'- -GCCGCCaCGCCC--------UUCGC---CGACC-----------AAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 43418 | 0.67 | 0.638272 |
Target: 5'- gGGCGGccuccgccgccgGCGGGGAGCuGGCUcGGcgCc -3' miRNA: 3'- gCCGCCa-----------CGCCCUUCG-CCGA-CCaaGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 67061 | 0.67 | 0.640258 |
Target: 5'- aGGCGGgcgcgcGCGGGGgcucgcucgGGCGGUccaUGGcgCGa -3' miRNA: 3'- gCCGCCa-----CGCCCU---------UCGCCG---ACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 136058 | 0.67 | 0.640258 |
Target: 5'- cCGGCGG-GCGGGcagggagaacaaAGGCGaGgaGGUgagCGg -3' miRNA: 3'- -GCCGCCaCGCCC------------UUCGC-CgaCCAa--GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 15320 | 0.67 | 0.644231 |
Target: 5'- uCGGC-GUGCGcuccaacgccgucccGGAGGC-GCUGGUUCu -3' miRNA: 3'- -GCCGcCACGC---------------CCUUCGcCGACCAAGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60511 | 0.67 | 0.650187 |
Target: 5'- cCGGCGccgcuugGCuGGGggGCGGC-GG-UCGa -3' miRNA: 3'- -GCCGCca-----CG-CCCuuCGCCGaCCaAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 20576 | 0.67 | 0.660101 |
Target: 5'- gCGGCGGggcgcuuaGCGGGGGggcGCGGCgcgGGccCGg -3' miRNA: 3'- -GCCGCCa-------CGCCCUU---CGCCGa--CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 117983 | 0.67 | 0.660101 |
Target: 5'- uCGGCGcccauggagcGcGCGGcGGAGCGGCUGGc--- -3' miRNA: 3'- -GCCGC----------CaCGCC-CUUCGCCGACCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 58998 | 0.66 | 0.669006 |
Target: 5'- gCGGCGGUGCGccGGGcucgcccAGCGGCgccgccaGGaaCGg -3' miRNA: 3'- -GCCGCCACGC--CCU-------UCGCCGa------CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 79307 | 0.66 | 0.669994 |
Target: 5'- gGGCGGcgUGCGcGGgcGCG-CUGGUgcgCGc -3' miRNA: 3'- gCCGCC--ACGC-CCuuCGCcGACCAa--GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 68730 | 0.66 | 0.669994 |
Target: 5'- gCGGCGGgcgccgGCGGGAagaAGCGcccGCcGGggCGc -3' miRNA: 3'- -GCCGCCa-----CGCCCU---UCGC---CGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 97591 | 0.66 | 0.669994 |
Target: 5'- gGGCGGaGCGGGcgGAGCgGGC-GGagCGg -3' miRNA: 3'- gCCGCCaCGCCC--UUCG-CCGaCCaaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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