miRNA display CGI


Results 81 - 100 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 97627 0.68 0.590671
Target:  5'- gGGCGGaGCGGGcgGAGCgGGCgcgGGUg-- -3'
miRNA:   3'- gCCGCCaCGCCC--UUCG-CCGa--CCAagc -5'
23563 3' -60.6 NC_005261.1 + 120885 0.68 0.590671
Target:  5'- gGGCGGggugcccggGCGGGgcGgGaGCUGGgcCGg -3'
miRNA:   3'- gCCGCCa--------CGCCCuuCgC-CGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128886 0.68 0.590671
Target:  5'- aGGCGGgggccggGUGGGAGGCgGGCg---UCGa -3'
miRNA:   3'- gCCGCCa------CGCCCUUCG-CCGaccaAGC- -5'
23563 3' -60.6 NC_005261.1 + 7961 0.68 0.589684
Target:  5'- uGGCGGgggcgcGCGGGAcgcccccaguacgAGCcGCUGGcgCGg -3'
miRNA:   3'- gCCGCCa-----CGCCCU-------------UCGcCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 56117 0.68 0.584752
Target:  5'- gCGGCGGgagcgcgccgcaggGCGGGggGCgcgGGCcgagGGUggCGg -3'
miRNA:   3'- -GCCGCCa-------------CGCCCuuCG---CCGa---CCAa-GC- -5'
23563 3' -60.6 NC_005261.1 + 13700 0.68 0.580812
Target:  5'- gGGCGGgGCGGGcuGGgGGCgGGggUGg -3'
miRNA:   3'- gCCGCCaCGCCCu-UCgCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 17711 0.68 0.580812
Target:  5'- uGGCGGUcGCGGaGAacucgggcAGCGGCgccgGGUa-- -3'
miRNA:   3'- gCCGCCA-CGCC-CU--------UCGCCGa---CCAagc -5'
23563 3' -60.6 NC_005261.1 + 37848 0.68 0.580812
Target:  5'- aCGGCGGcGUGguGGAGGCGGCcucGG-UCGc -3'
miRNA:   3'- -GCCGCCaCGC--CCUUCGCCGa--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 35305 0.68 0.580812
Target:  5'- gCGGCGGcgcUGCGcGAAGCGGCggaGGcgCu -3'
miRNA:   3'- -GCCGCC---ACGCcCUUCGCCGa--CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 5247 0.68 0.580812
Target:  5'- -aGCGGUGCGGGucGCGGUgcgcGGcgaCGa -3'
miRNA:   3'- gcCGCCACGCCCuuCGCCGa---CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 128361 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128304 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 23787 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 23844 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 34329 0.68 0.570989
Target:  5'- uGGCGGcGCGGGuGGCccGGCUuGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCCuUCG--CCGA-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 369 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 104886 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 88697 0.68 0.561205
Target:  5'- uGGUGGccGCGGacGGCGGCUGGcccgCGa -3'
miRNA:   3'- gCCGCCa-CGCCcuUCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 138040 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 129648 0.68 0.561205
Target:  5'- aCGGUGGcgGCGGc-GGCGGCaGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCGCCGaCCaaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.