Results 101 - 120 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23563 | 3' | -60.6 | NC_005261.1 | + | 127313 | 0.68 | 0.555357 |
Target: 5'- uGGCGGUggggcccugccgcccGCGGGGgccggAGCGGC-GGggCGc -3' miRNA: 3'- gCCGCCA---------------CGCCCU-----UCGCCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 105562 | 0.69 | 0.532156 |
Target: 5'- gCGGCGGgcgGCGGcGuuAGCGGCgcggGGggCu -3' miRNA: 3'- -GCCGCCa--CGCC-Cu-UCGCCGa---CCaaGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 110801 | 0.69 | 0.532156 |
Target: 5'- aCGGCGG-GCGaGGAGGCGGggGcGgaCGg -3' miRNA: 3'- -GCCGCCaCGC-CCUUCGCCgaC-CaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 12771 | 0.69 | 0.532156 |
Target: 5'- gCGGCGGUgGCGGGGggcucgucGGCGaGCUcGUcgUCGg -3' miRNA: 3'- -GCCGCCA-CGCCCU--------UCGC-CGAcCA--AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 1044 | 0.69 | 0.532156 |
Target: 5'- gCGGCGGgcgGCGGcGuuAGCGGCgcggGGggCu -3' miRNA: 3'- -GCCGCCa--CGCC-Cu-UCGCCGa---CCaaGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 48798 | 0.69 | 0.532156 |
Target: 5'- aCGGCGGgcGCGGGGAGCccGGC-GGccgCGc -3' miRNA: 3'- -GCCGCCa-CGCCCUUCG--CCGaCCaa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 24371 | 0.69 | 0.531197 |
Target: 5'- uCGGCGGUGCucccgguGGGcucgucGGCGGC-GGggCGg -3' miRNA: 3'- -GCCGCCACG-------CCCu-----UCGCCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 128888 | 0.69 | 0.531197 |
Target: 5'- uCGGCGGUGCucccgguGGGcucgucGGCGGC-GGggCGg -3' miRNA: 3'- -GCCGCCACG-------CCCu-----UCGCCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 89592 | 0.69 | 0.526409 |
Target: 5'- gGGCGGgggccggcgcagggGCGGGGcguGgGGCUGGgcgCGg -3' miRNA: 3'- gCCGCCa-------------CGCCCUu--CgCCGACCaa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 121792 | 0.69 | 0.522591 |
Target: 5'- cCGGCGGgcuggGCaGGggGCgcguGGCUGGgcucugCGg -3' miRNA: 3'- -GCCGCCa----CGcCCuuCG----CCGACCaa----GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 88030 | 0.69 | 0.522591 |
Target: 5'- cCGGCGGUGCcuGGggGCGGUccagUCa -3' miRNA: 3'- -GCCGCCACGc-CCuuCGCCGaccaAGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 93679 | 0.69 | 0.522591 |
Target: 5'- gCGGCGGcgccgGCGGGgcGCcGGCgGGUg-- -3' miRNA: 3'- -GCCGCCa----CGCCCuuCG-CCGaCCAagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 37331 | 0.69 | 0.521638 |
Target: 5'- gCGGCGGUGCGcGGcgaggccgcguacGAGgGGCUGcGcgCGc -3' miRNA: 3'- -GCCGCCACGC-CC-------------UUCgCCGAC-CaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 69574 | 0.69 | 0.520686 |
Target: 5'- cCGGCGGcGCGGGcGGCGGUgacgaugaccucGGUcgCGg -3' miRNA: 3'- -GCCGCCaCGCCCuUCGCCGa-----------CCAa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 97036 | 0.69 | 0.519734 |
Target: 5'- cCGGCcgcccacauccacaGG-GCGGGggGCGGCgGGcaCGa -3' miRNA: 3'- -GCCG--------------CCaCGCCCuuCGCCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 18051 | 0.69 | 0.513093 |
Target: 5'- aGGuUGG-GCGGGuGGGCGGUUGGcgUCGc -3' miRNA: 3'- gCC-GCCaCGCCC-UUCGCCGACCa-AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 15027 | 0.69 | 0.513093 |
Target: 5'- uCGGCgGGUGcCGGGGgcguAGCGGggGGggUCGg -3' miRNA: 3'- -GCCG-CCAC-GCCCU----UCGCCgaCCa-AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 13091 | 0.69 | 0.503666 |
Target: 5'- uCGGCGGgcgGCGGGcu-CGGCUcGGgggcgUCGg -3' miRNA: 3'- -GCCGCCa--CGCCCuucGCCGA-CCa----AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60397 | 0.69 | 0.503666 |
Target: 5'- uGGCGGcGagGGGggGCGGUggugcUGGggCGg -3' miRNA: 3'- gCCGCCaCg-CCCuuCGCCG-----ACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 55789 | 0.69 | 0.503666 |
Target: 5'- aCGGCGGcGCGGGGc-CGGCcgGGggCGc -3' miRNA: 3'- -GCCGCCaCGCCCUucGCCGa-CCaaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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