miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 48798 0.69 0.532156
Target:  5'- aCGGCGGgcGCGGGGAGCccGGC-GGccgCGc -3'
miRNA:   3'- -GCCGCCa-CGCCCUUCG--CCGaCCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 49128 0.66 0.709197
Target:  5'- gCGGCGG-GCGGGAcccccGCGcGCaGGUa-- -3'
miRNA:   3'- -GCCGCCaCGCCCUu----CGC-CGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 50995 0.72 0.357649
Target:  5'- aCGGCGGcGCGuGGgcGCGGCgGGagcUCGg -3'
miRNA:   3'- -GCCGCCaCGC-CCuuCGCCGaCCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 51509 0.66 0.709197
Target:  5'- gCGGCGGacgagGCGGcGAAGCuggacgcGCUGGgcgCGu -3'
miRNA:   3'- -GCCGCCa----CGCC-CUUCGc------CGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 54355 0.66 0.689686
Target:  5'- uGGCcagucccaGGUccGCGGGcAGCGGCUcGGggCGc -3'
miRNA:   3'- gCCG--------CCA--CGCCCuUCGCCGA-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 55137 0.67 0.620392
Target:  5'- gCGGCGGcGCuGGAGGC-GCUGGaagCGc -3'
miRNA:   3'- -GCCGCCaCGcCCUUCGcCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 55756 0.68 0.590671
Target:  5'- aCGGCGGgGaCGGGGAcGgGGCcgGGggCGg -3'
miRNA:   3'- -GCCGCCaC-GCCCUU-CgCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 55789 0.69 0.503666
Target:  5'- aCGGCGGcGCGGGGc-CGGCcgGGggCGc -3'
miRNA:   3'- -GCCGCCaCGCCCUucGCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 55819 0.66 0.699468
Target:  5'- aCGGCGGggccggcGCGGGGGacgacggccccGCGGgCUGGgcggCGc -3'
miRNA:   3'- -GCCGCCa------CGCCCUU-----------CGCC-GACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 56117 0.68 0.584752
Target:  5'- gCGGCGGgagcgcgccgcaggGCGGGggGCgcgGGCcgagGGUggCGg -3'
miRNA:   3'- -GCCGCCa-------------CGCCCuuCG---CCGa---CCAa-GC- -5'
23563 3' -60.6 NC_005261.1 + 56349 0.68 0.600558
Target:  5'- uGGCGGccGCaGGggGCGGgUGGg--- -3'
miRNA:   3'- gCCGCCa-CGcCCuuCGCCgACCaagc -5'
23563 3' -60.6 NC_005261.1 + 57190 0.68 0.600558
Target:  5'- uCGGCGGgaagGgGGGggGgGGCgcgcgGGUc-- -3'
miRNA:   3'- -GCCGCCa---CgCCCuuCgCCGa----CCAagc -5'
23563 3' -60.6 NC_005261.1 + 58998 0.66 0.669006
Target:  5'- gCGGCGGUGCGccGGGcucgcccAGCGGCgccgccaGGaaCGg -3'
miRNA:   3'- -GCCGCCACGC--CCU-------UCGCCGa------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 60052 0.66 0.679859
Target:  5'- aCGGCGGcgGCGaaGAGCGGCggccGGUccgCGg -3'
miRNA:   3'- -GCCGCCa-CGCccUUCGCCGa---CCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 60092 0.7 0.485045
Target:  5'- gCGGCGG-GCGccGggGCGGCgggGGUggCGa -3'
miRNA:   3'- -GCCGCCaCGCc-CuuCGCCGa--CCAa-GC- -5'
23563 3' -60.6 NC_005261.1 + 60171 0.66 0.709197
Target:  5'- gGGcCGGcGCGGGGgccgGGCccgcgaccaccGGCUGGggCGg -3'
miRNA:   3'- gCC-GCCaCGCCCU----UCG-----------CCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 60397 0.69 0.503666
Target:  5'- uGGCGGcGagGGGggGCGGUggugcUGGggCGg -3'
miRNA:   3'- gCCGCCaCg-CCCuuCGCCG-----ACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 60511 0.67 0.650187
Target:  5'- cCGGCGccgcuugGCuGGGggGCGGC-GG-UCGa -3'
miRNA:   3'- -GCCGCca-----CG-CCCuuCGCCGaCCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 60759 0.72 0.381199
Target:  5'- gGGCGG-GCGGGGGcGCGGCUGc---- -3'
miRNA:   3'- gCCGCCaCGCCCUU-CGCCGACcaagc -5'
23563 3' -60.6 NC_005261.1 + 60857 0.66 0.728462
Target:  5'- aGGgGGUGCGccGGAGacgcGCGGcCUGGUg-- -3'
miRNA:   3'- gCCgCCACGC--CCUU----CGCC-GACCAagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.