miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 88030 0.69 0.522591
Target:  5'- cCGGCGGUGCcuGGggGCGGUccagUCa -3'
miRNA:   3'- -GCCGCCACGc-CCuuCGCCGaccaAGc -5'
23563 3' -60.6 NC_005261.1 + 88697 0.68 0.561205
Target:  5'- uGGUGGccGCGGacGGCGGCUGGcccgCGa -3'
miRNA:   3'- gCCGCCa-CGCCcuUCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 89592 0.69 0.526409
Target:  5'- gGGCGGgggccggcgcagggGCGGGGcguGgGGCUGGgcgCGg -3'
miRNA:   3'- gCCGCCa-------------CGCCCUu--CgCCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 90227 0.66 0.728462
Target:  5'- cCGGCGGgGCGac-GGCGGCUGcgacgccguGUUCGc -3'
miRNA:   3'- -GCCGCCaCGCccuUCGCCGAC---------CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 91259 0.71 0.414169
Target:  5'- cCGGCGG-GCGGcGGcAGCGGCgacGGcgCGg -3'
miRNA:   3'- -GCCGCCaCGCC-CU-UCGCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 93679 0.69 0.522591
Target:  5'- gCGGCGGcgccgGCGGGgcGCcGGCgGGUg-- -3'
miRNA:   3'- -GCCGCCa----CGCCCuuCG-CCGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 97036 0.69 0.519734
Target:  5'- cCGGCcgcccacauccacaGG-GCGGGggGCGGCgGGcaCGa -3'
miRNA:   3'- -GCCG--------------CCaCGCCCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 97591 0.66 0.669994
Target:  5'- gGGCGGaGCGGGcgGAGCgGGC-GGagCGg -3'
miRNA:   3'- gCCGCCaCGCCC--UUCG-CCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 97627 0.68 0.590671
Target:  5'- gGGCGGaGCGGGcgGAGCgGGCgcgGGUg-- -3'
miRNA:   3'- gCCGCCaCGCCC--UUCG-CCGa--CCAagc -5'
23563 3' -60.6 NC_005261.1 + 97702 0.71 0.397465
Target:  5'- gGGCGGUG-GGGAgacGGCGGgUGGccCGg -3'
miRNA:   3'- gCCGCCACgCCCU---UCGCCgACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 97750 0.68 0.600558
Target:  5'- gGGCGGgGCGGGcucGGCGGCgcggccGGcaUCGa -3'
miRNA:   3'- gCCGCCaCGCCCu--UCGCCGa-----CCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 97975 0.67 0.629331
Target:  5'- gGaGCGGUGCccgGGGAgagugaagugggaGGCGGCgGGggCGc -3'
miRNA:   3'- gC-CGCCACG---CCCU-------------UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 98048 0.69 0.503666
Target:  5'- uGGCGGccgcgggcgGCGGGAccgcgGGCGGCgGGUg-- -3'
miRNA:   3'- gCCGCCa--------CGCCCU-----UCGCCGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 98249 0.67 0.610467
Target:  5'- gCGGCccGGUGCGGcGcgucAGGCGGCgcgcGcGUUCGa -3'
miRNA:   3'- -GCCG--CCACGCC-C----UUCGCCGa---C-CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 100685 0.71 0.422681
Target:  5'- uGGCGGcgGCGGG-AGCGGCgcgcGGaccUCGu -3'
miRNA:   3'- gCCGCCa-CGCCCuUCGCCGa---CCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 102123 0.66 0.699468
Target:  5'- gCGGCGGUcGCGGcccgaGAGUuaaguaugcaGGCUGGgggUCGc -3'
miRNA:   3'- -GCCGCCA-CGCCc----UUCG----------CCGACCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 102187 0.66 0.669994
Target:  5'- gCGGUGGgcUGCGGGucGCGGgguaGGggCGg -3'
miRNA:   3'- -GCCGCC--ACGCCCuuCGCCga--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 102574 0.7 0.45775
Target:  5'- cCGGCaGGgaGCGGGAGcGgGGCUGGggCu -3'
miRNA:   3'- -GCCG-CCa-CGCCCUU-CgCCGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 103100 0.71 0.431298
Target:  5'- -cGCGGggGCGGGGugcgacgccgccGGCGGCUGGggggcUCGc -3'
miRNA:   3'- gcCGCCa-CGCCCU------------UCGCCGACCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 103610 0.76 0.196943
Target:  5'- gCGGCGGcagcGCGGGAGGCGGCggcGGccaUCGc -3'
miRNA:   3'- -GCCGCCa---CGCCCUUCGCCGa--CCa--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.