miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 97036 0.69 0.519734
Target:  5'- cCGGCcgcccacauccacaGG-GCGGGggGCGGCgGGcaCGa -3'
miRNA:   3'- -GCCG--------------CCaCGCCCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 93679 0.69 0.522591
Target:  5'- gCGGCGGcgccgGCGGGgcGCcGGCgGGUg-- -3'
miRNA:   3'- -GCCGCCa----CGCCCuuCG-CCGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 91259 0.71 0.414169
Target:  5'- cCGGCGG-GCGGcGGcAGCGGCgacGGcgCGg -3'
miRNA:   3'- -GCCGCCaCGCC-CU-UCGCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 90227 0.66 0.728462
Target:  5'- cCGGCGGgGCGac-GGCGGCUGcgacgccguGUUCGc -3'
miRNA:   3'- -GCCGCCaCGCccuUCGCCGAC---------CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 89592 0.69 0.526409
Target:  5'- gGGCGGgggccggcgcagggGCGGGGcguGgGGCUGGgcgCGg -3'
miRNA:   3'- gCCGCCa-------------CGCCCUu--CgCCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 88697 0.68 0.561205
Target:  5'- uGGUGGccGCGGacGGCGGCUGGcccgCGa -3'
miRNA:   3'- gCCGCCa-CGCCcuUCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 88030 0.69 0.522591
Target:  5'- cCGGCGGUGCcuGGggGCGGUccagUCa -3'
miRNA:   3'- -GCCGCCACGc-CCuuCGCCGaccaAGc -5'
23563 3' -60.6 NC_005261.1 + 86193 0.68 0.590671
Target:  5'- gCGGCGG-GCGGGgcGgGcGUUGGccUCGu -3'
miRNA:   3'- -GCCGCCaCGCCCuuCgC-CGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 85917 0.66 0.728462
Target:  5'- aCGGCGaggaGUGCGacgacgacaauGGuGGCGGCUGGacCGc -3'
miRNA:   3'- -GCCGC----CACGC-----------CCuUCGCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 82854 0.66 0.718865
Target:  5'- gCGGCGGcagcgGCGGcGGGCcaGGCUGGg--- -3'
miRNA:   3'- -GCCGCCa----CGCCcUUCG--CCGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 81354 0.72 0.357649
Target:  5'- gGGCGGgggcuUGCGGGggGCGccgggcucGCUGGgggCGc -3'
miRNA:   3'- gCCGCC-----ACGCCCuuCGC--------CGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 80062 0.7 0.485045
Target:  5'- gCGGCGGgcGCGGGggGCGuGggGGacgCGg -3'
miRNA:   3'- -GCCGCCa-CGCCCuuCGC-CgaCCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 79909 0.73 0.320715
Target:  5'- aGGCGGUGCuc-GGGCGGCUGGgcCGc -3'
miRNA:   3'- gCCGCCACGcccUUCGCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 79687 0.68 0.590671
Target:  5'- aCGGCGcaggagccCGGGcGGCGGCUGGgcUCGa -3'
miRNA:   3'- -GCCGCcac-----GCCCuUCGCCGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 79307 0.66 0.669994
Target:  5'- gGGCGGcgUGCGcGGgcGCG-CUGGUgcgCGc -3'
miRNA:   3'- gCCGCC--ACGC-CCuuCGCcGACCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 78525 0.67 0.630324
Target:  5'- cCGGCGG-GCGGGucugcccgGAGCGcguGCUGGccgagggcggcUUCGa -3'
miRNA:   3'- -GCCGCCaCGCCC--------UUCGC---CGACC-----------AAGC- -5'
23563 3' -60.6 NC_005261.1 + 72617 0.66 0.725591
Target:  5'- gGGCGG-GCGGGcgcagGGGCGGCUuuauaguccccuggGGgccgccUCGg -3'
miRNA:   3'- gCCGCCaCGCCC-----UUCGCCGA--------------CCa-----AGC- -5'
23563 3' -60.6 NC_005261.1 + 71998 0.66 0.722712
Target:  5'- aCGGCGGgcaucaagcagcggcUGCuGGGcGGCGuGCUGGcgCu -3'
miRNA:   3'- -GCCGCC---------------ACG-CCCuUCGC-CGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 70438 0.67 0.610467
Target:  5'- gGGCGGcgccgagGCGgaggaGGggGCGGCcgGGggCGg -3'
miRNA:   3'- gCCGCCa------CGC-----CCuuCGCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 69756 0.72 0.350029
Target:  5'- aGGCGaGcGCGGGggGCGGCgccgGGg--- -3'
miRNA:   3'- gCCGC-CaCGCCCuuCGCCGa---CCaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.