Results 81 - 100 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23563 | 3' | -60.6 | NC_005261.1 | + | 69574 | 0.69 | 0.520686 |
Target: 5'- cCGGCGGcGCGGGcGGCGGUgacgaugaccucGGUcgCGg -3' miRNA: 3'- -GCCGCCaCGCCCuUCGCCGa-----------CCAa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 69309 | 0.68 | 0.600558 |
Target: 5'- cCGGUGGcgGCGGG-AGCGGg-GGUgacggCGa -3' miRNA: 3'- -GCCGCCa-CGCCCuUCGCCgaCCAa----GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 68730 | 0.66 | 0.669994 |
Target: 5'- gCGGCGGgcgccgGCGGGAagaAGCGcccGCcGGggCGc -3' miRNA: 3'- -GCCGCCa-----CGCCCU---UCGC---CGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 67105 | 0.66 | 0.689686 |
Target: 5'- -cGCGGUGCGGGcGGCGcGCgcaGUgCGg -3' miRNA: 3'- gcCGCCACGCCCuUCGC-CGac-CAaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 67061 | 0.67 | 0.640258 |
Target: 5'- aGGCGGgcgcgcGCGGGGgcucgcucgGGCGGUccaUGGcgCGa -3' miRNA: 3'- gCCGCCa-----CGCCCU---------UCGCCG---ACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 65791 | 0.66 | 0.709197 |
Target: 5'- gCGGCGGgaacauccGCGGGucggggugcccGGGCGGC-GGcgCGa -3' miRNA: 3'- -GCCGCCa-------CGCCC-----------UUCGCCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 65524 | 0.66 | 0.718865 |
Target: 5'- gCGGCGGgcgcgacgcugGCGGaccuGGCGcGCcGGUUCGc -3' miRNA: 3'- -GCCGCCa----------CGCCcu--UCGC-CGaCCAAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60857 | 0.66 | 0.728462 |
Target: 5'- aGGgGGUGCGccGGAGacgcGCGGcCUGGUg-- -3' miRNA: 3'- gCCgCCACGC--CCUU----CGCC-GACCAagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60759 | 0.72 | 0.381199 |
Target: 5'- gGGCGG-GCGGGGGcGCGGCUGc---- -3' miRNA: 3'- gCCGCCaCGCCCUU-CGCCGACcaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60511 | 0.67 | 0.650187 |
Target: 5'- cCGGCGccgcuugGCuGGGggGCGGC-GG-UCGa -3' miRNA: 3'- -GCCGCca-----CG-CCCuuCGCCGaCCaAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60397 | 0.69 | 0.503666 |
Target: 5'- uGGCGGcGagGGGggGCGGUggugcUGGggCGg -3' miRNA: 3'- gCCGCCaCg-CCCuuCGCCG-----ACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60171 | 0.66 | 0.709197 |
Target: 5'- gGGcCGGcGCGGGGgccgGGCccgcgaccaccGGCUGGggCGg -3' miRNA: 3'- gCC-GCCaCGCCCU----UCG-----------CCGACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60092 | 0.7 | 0.485045 |
Target: 5'- gCGGCGG-GCGccGggGCGGCgggGGUggCGa -3' miRNA: 3'- -GCCGCCaCGCc-CuuCGCCGa--CCAa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60052 | 0.66 | 0.679859 |
Target: 5'- aCGGCGGcgGCGaaGAGCGGCggccGGUccgCGg -3' miRNA: 3'- -GCCGCCa-CGCccUUCGCCGa---CCAa--GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 58998 | 0.66 | 0.669006 |
Target: 5'- gCGGCGGUGCGccGGGcucgcccAGCGGCgccgccaGGaaCGg -3' miRNA: 3'- -GCCGCCACGC--CCU-------UCGCCGa------CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 57190 | 0.68 | 0.600558 |
Target: 5'- uCGGCGGgaagGgGGGggGgGGCgcgcgGGUc-- -3' miRNA: 3'- -GCCGCCa---CgCCCuuCgCCGa----CCAagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 56349 | 0.68 | 0.600558 |
Target: 5'- uGGCGGccGCaGGggGCGGgUGGg--- -3' miRNA: 3'- gCCGCCa-CGcCCuuCGCCgACCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 56117 | 0.68 | 0.584752 |
Target: 5'- gCGGCGGgagcgcgccgcaggGCGGGggGCgcgGGCcgagGGUggCGg -3' miRNA: 3'- -GCCGCCa-------------CGCCCuuCG---CCGa---CCAa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 55819 | 0.66 | 0.699468 |
Target: 5'- aCGGCGGggccggcGCGGGGGacgacggccccGCGGgCUGGgcggCGc -3' miRNA: 3'- -GCCGCCa------CGCCCUU-----------CGCC-GACCaa--GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 55789 | 0.69 | 0.503666 |
Target: 5'- aCGGCGGcGCGGGGc-CGGCcgGGggCGc -3' miRNA: 3'- -GCCGCCaCGCCCUucGCCGa-CCaaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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