miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 55756 0.68 0.590671
Target:  5'- aCGGCGGgGaCGGGGAcGgGGCcgGGggCGg -3'
miRNA:   3'- -GCCGCCaC-GCCCUU-CgCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 55137 0.67 0.620392
Target:  5'- gCGGCGGcGCuGGAGGC-GCUGGaagCGc -3'
miRNA:   3'- -GCCGCCaCGcCCUUCGcCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 54355 0.66 0.689686
Target:  5'- uGGCcagucccaGGUccGCGGGcAGCGGCUcGGggCGc -3'
miRNA:   3'- gCCG--------CCA--CGCCCuUCGCCGA-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 51509 0.66 0.709197
Target:  5'- gCGGCGGacgagGCGGcGAAGCuggacgcGCUGGgcgCGu -3'
miRNA:   3'- -GCCGCCa----CGCC-CUUCGc------CGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 50995 0.72 0.357649
Target:  5'- aCGGCGGcGCGuGGgcGCGGCgGGagcUCGg -3'
miRNA:   3'- -GCCGCCaCGC-CCuuCGCCGaCCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 49128 0.66 0.709197
Target:  5'- gCGGCGG-GCGGGAcccccGCGcGCaGGUa-- -3'
miRNA:   3'- -GCCGCCaCGCCCUu----CGC-CGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 48798 0.69 0.532156
Target:  5'- aCGGCGGgcGCGGGGAGCccGGC-GGccgCGc -3'
miRNA:   3'- -GCCGCCa-CGCCCUUCG--CCGaCCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 48443 0.68 0.600558
Target:  5'- -cGCGGUGCGuGgcGCGGCcGGcgCGg -3'
miRNA:   3'- gcCGCCACGCcCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 44411 0.69 0.494315
Target:  5'- cCGGCGGcUGCGGcGGuGGCGGC-GGcgCGc -3'
miRNA:   3'- -GCCGCC-ACGCC-CU-UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 43418 0.67 0.638272
Target:  5'- gGGCGGccuccgccgccgGCGGGGAGCuGGCUcGGcgCc -3'
miRNA:   3'- gCCGCCa-----------CGCCCUUCG-CCGA-CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 43038 0.7 0.45775
Target:  5'- gGGCGGcGCGGGucccAG-GGCUGGggCa -3'
miRNA:   3'- gCCGCCaCGCCCu---UCgCCGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 42257 0.66 0.709197
Target:  5'- uCGGgGGUGauGGuggccGGCGcGCUGGggUCGa -3'
miRNA:   3'- -GCCgCCACgcCCu----UCGC-CGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 39375 0.66 0.718865
Target:  5'- uCGGCGGc-CGGGGagGGCGGCccUGGcggCGa -3'
miRNA:   3'- -GCCGCCacGCCCU--UCGCCG--ACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 38938 0.7 0.485045
Target:  5'- cCGGCGGccggGCGGGccGCGGCgcgcgGGcugCGc -3'
miRNA:   3'- -GCCGCCa---CGCCCuuCGCCGa----CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 38372 0.66 0.706285
Target:  5'- gCGGCGGcGCGcGGcggccggugccgcuGGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCaCGC-CC--------------UUCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 38372 0.67 0.630324
Target:  5'- gGGCGGc-CGGGAAGCGGCacc-UCGu -3'
miRNA:   3'- gCCGCCacGCCCUUCGCCGaccaAGC- -5'
23563 3' -60.6 NC_005261.1 + 38253 0.68 0.59759
Target:  5'- gGGCucgcacgccagccuGG-GCuGGggGCGGCUGGUgcacgCGg -3'
miRNA:   3'- gCCG--------------CCaCGcCCuuCGCCGACCAa----GC- -5'
23563 3' -60.6 NC_005261.1 + 38115 0.7 0.43914
Target:  5'- gCGGcCGGUGCGGGcgccgcuGGGCGGC-GGcagCGg -3'
miRNA:   3'- -GCC-GCCACGCCC-------UUCGCCGaCCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 37848 0.68 0.580812
Target:  5'- aCGGCGGcGUGguGGAGGCGGCcucGG-UCGc -3'
miRNA:   3'- -GCCGCCaCGC--CCUUCGCCGa--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 37360 0.66 0.679859
Target:  5'- gGGCGGUGCucgccgcccGAGGCGGCgcugUGGUacgCGg -3'
miRNA:   3'- gCCGCCACGcc-------CUUCGCCG----ACCAa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.