Results 61 - 80 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23563 | 3' | -60.6 | NC_005261.1 | + | 117588 | 0.71 | 0.431298 |
Target: 5'- cCGGCGGUGCGGGcGGCgaaccgGGCcGGcagUCc -3' miRNA: 3'- -GCCGCCACGCCCuUCG------CCGaCCa--AGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 103100 | 0.71 | 0.431298 |
Target: 5'- -cGCGGggGCGGGGugcgacgccgccGGCGGCUGGggggcUCGc -3' miRNA: 3'- gcCGCCa-CGCCCU------------UCGCCGACCa----AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60092 | 0.7 | 0.485045 |
Target: 5'- gCGGCGG-GCGccGggGCGGCgggGGUggCGa -3' miRNA: 3'- -GCCGCCaCGCc-CuuCGCCGa--CCAa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 44411 | 0.69 | 0.494315 |
Target: 5'- cCGGCGGcUGCGGcGGuGGCGGC-GGcgCGc -3' miRNA: 3'- -GCCGCC-ACGCC-CU-UCGCCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 21625 | 0.69 | 0.502727 |
Target: 5'- gGGCGGUGCGaGGGcuGCGGCagcaucuuggcggUGGccUCGg -3' miRNA: 3'- gCCGCCACGC-CCUu-CGCCG-------------ACCa-AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60397 | 0.69 | 0.503666 |
Target: 5'- uGGCGGcGagGGGggGCGGUggugcUGGggCGg -3' miRNA: 3'- gCCGCCaCg-CCCuuCGCCG-----ACCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 55789 | 0.69 | 0.503666 |
Target: 5'- aCGGCGGcGCGGGGc-CGGCcgGGggCGc -3' miRNA: 3'- -GCCGCCaCGCCCUucGCCGa-CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 18051 | 0.69 | 0.513093 |
Target: 5'- aGGuUGG-GCGGGuGGGCGGUUGGcgUCGc -3' miRNA: 3'- gCC-GCCaCGCCC-UUCGCCGACCa-AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 69574 | 0.69 | 0.520686 |
Target: 5'- cCGGCGGcGCGGGcGGCGGUgacgaugaccucGGUcgCGg -3' miRNA: 3'- -GCCGCCaCGCCCuUCGCCGa-----------CCAa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 37331 | 0.69 | 0.521638 |
Target: 5'- gCGGCGGUGCGcGGcgaggccgcguacGAGgGGCUGcGcgCGc -3' miRNA: 3'- -GCCGCCACGC-CC-------------UUCgCCGAC-CaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 33165 | 0.7 | 0.475858 |
Target: 5'- uCGGCGGacccUGcCGGGGAG-GGCUGGggaggggCGg -3' miRNA: 3'- -GCCGCC----AC-GCCCUUCgCCGACCaa-----GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 126656 | 0.7 | 0.466758 |
Target: 5'- aCGGCGGgggGgGGGAAGgGGCaUGGc--- -3' miRNA: 3'- -GCCGCCa--CgCCCUUCgCCG-ACCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 38115 | 0.7 | 0.43914 |
Target: 5'- gCGGcCGGUGCGGGcgccgcuGGGCGGC-GGcagCGg -3' miRNA: 3'- -GCC-GCCACGCCC-------UUCGCCGaCCaa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 115946 | 0.7 | 0.440017 |
Target: 5'- aGGCGG-GCGGGGggGGCGGC-GGa--- -3' miRNA: 3'- gCCGCCaCGCCCU--UCGCCGaCCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 128516 | 0.7 | 0.448835 |
Target: 5'- gCGGCGGaGCgcugcugcuagGGGAGGgGGCggagcgcggGGUUCGg -3' miRNA: 3'- -GCCGCCaCG-----------CCCUUCgCCGa--------CCAAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 8949 | 0.7 | 0.448835 |
Target: 5'- gGGCGG-GCGGG--GCGGCgcggGGgcuugUCGg -3' miRNA: 3'- gCCGCCaCGCCCuuCGCCGa---CCa----AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 12626 | 0.7 | 0.45775 |
Target: 5'- gGGCGG-GCGGGcAGUGGCgcuUUCGa -3' miRNA: 3'- gCCGCCaCGCCCuUCGCCGaccAAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 43038 | 0.7 | 0.45775 |
Target: 5'- gGGCGGcGCGGGucccAG-GGCUGGggCa -3' miRNA: 3'- gCCGCCaCGCCCu---UCgCCGACCaaGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 102574 | 0.7 | 0.45775 |
Target: 5'- cCGGCaGGgaGCGGGAGcGgGGCUGGggCu -3' miRNA: 3'- -GCCG-CCa-CGCCCUU-CgCCGACCaaGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 22728 | 0.7 | 0.466758 |
Target: 5'- aGGUGGUGCGGGGgcuGCGGCg------ -3' miRNA: 3'- gCCGCCACGCCCUu--CGCCGaccaagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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