miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 48798 0.69 0.532156
Target:  5'- aCGGCGGgcGCGGGGAGCccGGC-GGccgCGc -3'
miRNA:   3'- -GCCGCCa-CGCCCUUCG--CCGaCCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 88697 0.68 0.561205
Target:  5'- uGGUGGccGCGGacGGCGGCUGGcccgCGa -3'
miRNA:   3'- gCCGCCa-CGCCcuUCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 104886 0.68 0.561205
Target:  5'- gCGGCGGUgGCGGcGGuGGCGGCggcGGcggCGg -3'
miRNA:   3'- -GCCGCCA-CGCC-CU-UCGCCGa--CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 34329 0.68 0.570989
Target:  5'- uGGCGGcGCGGGuGGCccGGCUuGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCCuUCG--CCGA-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 17711 0.68 0.580812
Target:  5'- uGGCGGUcGCGGaGAacucgggcAGCGGCgccgGGUa-- -3'
miRNA:   3'- gCCGCCA-CGCC-CU--------UCGCCGa---CCAagc -5'
23563 3' -60.6 NC_005261.1 + 35305 0.68 0.580812
Target:  5'- gCGGCGGcgcUGCGcGAAGCGGCggaGGcgCu -3'
miRNA:   3'- -GCCGCC---ACGCcCUUCGCCGa--CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 37848 0.68 0.580812
Target:  5'- aCGGCGGcGUGguGGAGGCGGCcucGG-UCGc -3'
miRNA:   3'- -GCCGCCaCGC--CCUUCGCCGa--CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 37331 0.69 0.521638
Target:  5'- gCGGCGGUGCGcGGcgaggccgcguacGAGgGGCUGcGcgCGc -3'
miRNA:   3'- -GCCGCCACGC-CC-------------UUCgCCGAC-CaaGC- -5'
23563 3' -60.6 NC_005261.1 + 69574 0.69 0.520686
Target:  5'- cCGGCGGcGCGGGcGGCGGUgacgaugaccucGGUcgCGg -3'
miRNA:   3'- -GCCGCCaCGCCCuUCGCCGa-----------CCAa-GC- -5'
23563 3' -60.6 NC_005261.1 + 18051 0.69 0.513093
Target:  5'- aGGuUGG-GCGGGuGGGCGGUUGGcgUCGc -3'
miRNA:   3'- gCC-GCCaCGCCC-UUCGCCGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 102574 0.7 0.45775
Target:  5'- cCGGCaGGgaGCGGGAGcGgGGCUGGggCu -3'
miRNA:   3'- -GCCG-CCa-CGCCCUU-CgCCGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 22728 0.7 0.466758
Target:  5'- aGGUGGUGCGGGGgcuGCGGCg------ -3'
miRNA:   3'- gCCGCCACGCCCUu--CGCCGaccaagc -5'
23563 3' -60.6 NC_005261.1 + 126656 0.7 0.466758
Target:  5'- aCGGCGGgggGgGGGAAGgGGCaUGGc--- -3'
miRNA:   3'- -GCCGCCa--CgCCCUUCgCCG-ACCaagc -5'
23563 3' -60.6 NC_005261.1 + 33165 0.7 0.475858
Target:  5'- uCGGCGGacccUGcCGGGGAG-GGCUGGggaggggCGg -3'
miRNA:   3'- -GCCGCC----AC-GCCCUUCgCCGACCaa-----GC- -5'
23563 3' -60.6 NC_005261.1 + 60092 0.7 0.485045
Target:  5'- gCGGCGG-GCGccGggGCGGCgggGGUggCGa -3'
miRNA:   3'- -GCCGCCaCGCc-CuuCGCCGa--CCAa-GC- -5'
23563 3' -60.6 NC_005261.1 + 44411 0.69 0.494315
Target:  5'- cCGGCGGcUGCGGcGGuGGCGGC-GGcgCGc -3'
miRNA:   3'- -GCCGCC-ACGCC-CU-UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 21625 0.69 0.502727
Target:  5'- gGGCGGUGCGaGGGcuGCGGCagcaucuuggcggUGGccUCGg -3'
miRNA:   3'- gCCGCCACGC-CCUu-CGCCG-------------ACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 60397 0.69 0.503666
Target:  5'- uGGCGGcGagGGGggGCGGUggugcUGGggCGg -3'
miRNA:   3'- gCCGCCaCg-CCCuuCGCCG-----ACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 55789 0.69 0.503666
Target:  5'- aCGGCGGcGCGGGGc-CGGCcgGGggCGc -3'
miRNA:   3'- -GCCGCCaCGCCCUucGCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 5247 0.68 0.580812
Target:  5'- -aGCGGUGCGGGucGCGGUgcgcGGcgaCGa -3'
miRNA:   3'- gcCGCCACGCCCuuCGCCGa---CCaa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.