Results 121 - 140 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23563 | 3' | -60.6 | NC_005261.1 | + | 136058 | 0.67 | 0.640258 |
Target: 5'- cCGGCGG-GCGGGcagggagaacaaAGGCGaGgaGGUgagCGg -3' miRNA: 3'- -GCCGCCaCGCCC------------UUCGC-CgaCCAa--GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 58998 | 0.66 | 0.669006 |
Target: 5'- gCGGCGGUGCGccGGGcucgcccAGCGGCgccgccaGGaaCGg -3' miRNA: 3'- -GCCGCCACGC--CCU-------UCGCCGa------CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 67105 | 0.66 | 0.689686 |
Target: 5'- -cGCGGUGCGGGcGGCGcGCgcaGUgCGg -3' miRNA: 3'- gcCGCCACGCCCuUCGC-CGac-CAaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 11926 | 0.66 | 0.699468 |
Target: 5'- cCGGCGGcUGCGGcGGcccgcgccgcGGCGGCUcgcccGGcgCGc -3' miRNA: 3'- -GCCGCC-ACGCC-CU----------UCGCCGA-----CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 65791 | 0.66 | 0.709197 |
Target: 5'- gCGGCGGgaacauccGCGGGucggggugcccGGGCGGC-GGcgCGa -3' miRNA: 3'- -GCCGCCa-------CGCCC-----------UUCGCCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 49128 | 0.66 | 0.709197 |
Target: 5'- gCGGCGG-GCGGGAcccccGCGcGCaGGUa-- -3' miRNA: 3'- -GCCGCCaCGCCCUu----CGC-CGaCCAagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 33724 | 0.66 | 0.715005 |
Target: 5'- gGGCGGUGgGGGccugccccucgcGCGGCgccgGGgcCGg -3' miRNA: 3'- gCCGCCACgCCCuu----------CGCCGa---CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 39375 | 0.66 | 0.718865 |
Target: 5'- uCGGCGGc-CGGGGagGGCGGCccUGGcggCGa -3' miRNA: 3'- -GCCGCCacGCCCU--UCGCCG--ACCaa-GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 72617 | 0.66 | 0.725591 |
Target: 5'- gGGCGG-GCGGGcgcagGGGCGGCUuuauaguccccuggGGgccgccUCGg -3' miRNA: 3'- gCCGCCaCGCCC-----UUCGCCGA--------------CCa-----AGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 13122 | 0.66 | 0.728462 |
Target: 5'- nGGCGGccGCGGGgcGCGugUGG-UCGg -3' miRNA: 3'- gCCGCCa-CGCCCuuCGCcgACCaAGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 33798 | 0.66 | 0.689686 |
Target: 5'- cCGcGCGGgcgGCGGGcuugucuuuGGGCGGCcggGGggCGc -3' miRNA: 3'- -GC-CGCCa--CGCCC---------UUCGCCGa--CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 54355 | 0.66 | 0.689686 |
Target: 5'- uGGCcagucccaGGUccGCGGGcAGCGGCUcGGggCGc -3' miRNA: 3'- gCCG--------CCA--CGCCCuUCGCCGA-CCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 97591 | 0.66 | 0.669994 |
Target: 5'- gGGCGGaGCGGGcgGAGCgGGC-GGagCGg -3' miRNA: 3'- gCCGCCaCGCCC--UUCG-CCGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 111085 | 0.66 | 0.669994 |
Target: 5'- gGGCcuGGUGUGGGggGCcggGGaCUGGg--- -3' miRNA: 3'- gCCG--CCACGCCCuuCG---CC-GACCaagc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 68730 | 0.66 | 0.669994 |
Target: 5'- gCGGCGGgcgccgGCGGGAagaAGCGcccGCcGGggCGc -3' miRNA: 3'- -GCCGCCa-----CGCCCU---UCGC---CGaCCaaGC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 2595 | 0.66 | 0.670982 |
Target: 5'- gCGGCGGaagccgccgucggcgGCGGGGccgccgGGCGGCaUGGggCc -3' miRNA: 3'- -GCCGCCa--------------CGCCCU------UCGCCG-ACCaaGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 11483 | 0.66 | 0.679859 |
Target: 5'- gGGCGGgGCGGGGGuGCcGGCUcgaGGcUUCu -3' miRNA: 3'- gCCGCCaCGCCCUU-CG-CCGA---CC-AAGc -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 37360 | 0.66 | 0.679859 |
Target: 5'- gGGCGGUGCucgccgcccGAGGCGGCgcugUGGUacgCGg -3' miRNA: 3'- gCCGCCACGcc-------CUUCGCCG----ACCAa--GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 60052 | 0.66 | 0.679859 |
Target: 5'- aCGGCGGcgGCGaaGAGCGGCggccGGUccgCGg -3' miRNA: 3'- -GCCGCCa-CGCccUUCGCCGa---CCAa--GC- -5' |
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23563 | 3' | -60.6 | NC_005261.1 | + | 118921 | 0.66 | 0.687724 |
Target: 5'- cCGGCGccGCGGGcgcggcgccgcGCGGCUGGccgCGg -3' miRNA: 3'- -GCCGCcaCGCCCuu---------CGCCGACCaa-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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