miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 56117 0.68 0.584752
Target:  5'- gCGGCGGgagcgcgccgcaggGCGGGggGCgcgGGCcgagGGUggCGg -3'
miRNA:   3'- -GCCGCCa-------------CGCCCuuCG---CCGa---CCAa-GC- -5'
23563 3' -60.6 NC_005261.1 + 129648 0.68 0.561205
Target:  5'- aCGGUGGcgGCGGc-GGCGGCaGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 49128 0.66 0.709197
Target:  5'- gCGGCGG-GCGGGAcccccGCGcGCaGGUa-- -3'
miRNA:   3'- -GCCGCCaCGCCCUu----CGC-CGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 67105 0.66 0.689686
Target:  5'- -cGCGGUGCGGGcGGCGcGCgcaGUgCGg -3'
miRNA:   3'- gcCGCCACGCCCuUCGC-CGac-CAaGC- -5'
23563 3' -60.6 NC_005261.1 + 60052 0.66 0.679859
Target:  5'- aCGGCGGcgGCGaaGAGCGGCggccGGUccgCGg -3'
miRNA:   3'- -GCCGCCa-CGCccUUCGCCGa---CCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 2595 0.66 0.670982
Target:  5'- gCGGCGGaagccgccgucggcgGCGGGGccgccgGGCGGCaUGGggCc -3'
miRNA:   3'- -GCCGCCa--------------CGCCCU------UCGCCG-ACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 136058 0.67 0.640258
Target:  5'- cCGGCGG-GCGGGcagggagaacaaAGGCGaGgaGGUgagCGg -3'
miRNA:   3'- -GCCGCCaCGCCC------------UUCGC-CgaCCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 111602 0.67 0.630324
Target:  5'- -cGCGGaGUGGGc-GCGGCUGGgcugCGg -3'
miRNA:   3'- gcCGCCaCGCCCuuCGCCGACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 98249 0.67 0.610467
Target:  5'- gCGGCccGGUGCGGcGcgucAGGCGGCgcgcGcGUUCGa -3'
miRNA:   3'- -GCCG--CCACGCC-C----UUCGCCGa---C-CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 97750 0.68 0.600558
Target:  5'- gGGCGGgGCGGGcucGGCGGCgcggccGGcaUCGa -3'
miRNA:   3'- gCCGCCaCGCCCu--UCGCCGa-----CCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 12064 0.74 0.293278
Target:  5'- cCGGCGGUGCGGc-AGCGGCguccgcgccGGggCGg -3'
miRNA:   3'- -GCCGCCACGCCcuUCGCCGa--------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 26876 0.72 0.342525
Target:  5'- gGGCGGggguggGUGGGggGgGGCgGGggCGc -3'
miRNA:   3'- gCCGCCa-----CGCCCuuCgCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 12771 0.69 0.532156
Target:  5'- gCGGCGGUgGCGGGGggcucgucGGCGaGCUcGUcgUCGg -3'
miRNA:   3'- -GCCGCCA-CGCCCU--------UCGC-CGAcCA--AGC- -5'
23563 3' -60.6 NC_005261.1 + 121792 0.69 0.522591
Target:  5'- cCGGCGGgcuggGCaGGggGCgcguGGCUGGgcucugCGg -3'
miRNA:   3'- -GCCGCCa----CGcCCuuCG----CCGACCaa----GC- -5'
23563 3' -60.6 NC_005261.1 + 98048 0.69 0.503666
Target:  5'- uGGCGGccgcgggcgGCGGGAccgcgGGCGGCgGGUg-- -3'
miRNA:   3'- gCCGCCa--------CGCCCU-----UCGCCGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 38938 0.7 0.485045
Target:  5'- cCGGCGGccggGCGGGccGCGGCgcgcgGGcugCGc -3'
miRNA:   3'- -GCCGCCa---CGCCCuuCGCCGa----CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 11429 0.7 0.440017
Target:  5'- aGGCGG-GCGGGGggGGCGGC-GGa--- -3'
miRNA:   3'- gCCGCCaCGCCCU--UCGCCGaCCaagc -5'
23563 3' -60.6 NC_005261.1 + 529 0.71 0.431298
Target:  5'- gGGCGG-GCGGGggGCagGGCggacggcGGcUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCG--CCGa------CCaAGC- -5'
23563 3' -60.6 NC_005261.1 + 128070 0.71 0.405763
Target:  5'- uGGCGGgcggGCGGGcGAGCGaGCgGGUUa- -3'
miRNA:   3'- gCCGCCa---CGCCC-UUCGC-CGaCCAAgc -5'
23563 3' -60.6 NC_005261.1 + 81354 0.72 0.357649
Target:  5'- gGGCGGgggcuUGCGGGggGCGccgggcucGCUGGgggCGc -3'
miRNA:   3'- gCCGCC-----ACGCCCuuCGC--------CGACCaa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.