miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 67105 0.66 0.689686
Target:  5'- -cGCGGUGCGGGcGGCGcGCgcaGUgCGg -3'
miRNA:   3'- gcCGCCACGCCCuUCGC-CGac-CAaGC- -5'
23563 3' -60.6 NC_005261.1 + 49128 0.66 0.709197
Target:  5'- gCGGCGG-GCGGGAcccccGCGcGCaGGUa-- -3'
miRNA:   3'- -GCCGCCaCGCCCUu----CGC-CGaCCAagc -5'
23563 3' -60.6 NC_005261.1 + 15027 0.69 0.513093
Target:  5'- uCGGCgGGUGcCGGGGgcguAGCGGggGGggUCGg -3'
miRNA:   3'- -GCCG-CCAC-GCCCU----UCGCCgaCCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 321 0.69 0.503666
Target:  5'- nGGCGGcUGCGGc-GGCGGCUGcggCGg -3'
miRNA:   3'- gCCGCC-ACGCCcuUCGCCGACcaaGC- -5'
23563 3' -60.6 NC_005261.1 + 32913 0.7 0.448835
Target:  5'- gGGCGcGcGUGGGggGCGGCgggcggggggGGggCGg -3'
miRNA:   3'- gCCGC-CaCGCCCuuCGCCGa---------CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 97750 0.68 0.600558
Target:  5'- gGGCGGgGCGGGcucGGCGGCgcggccGGcaUCGa -3'
miRNA:   3'- gCCGCCaCGCCCu--UCGCCGa-----CCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 79687 0.68 0.590671
Target:  5'- aCGGCGcaggagccCGGGcGGCGGCUGGgcUCGa -3'
miRNA:   3'- -GCCGCcac-----GCCCuUCGCCGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 126656 0.7 0.466758
Target:  5'- aCGGCGGgggGgGGGAAGgGGCaUGGc--- -3'
miRNA:   3'- -GCCGCCa--CgCCCUUCgCCG-ACCaagc -5'
23563 3' -60.6 NC_005261.1 + 86193 0.68 0.590671
Target:  5'- gCGGCGG-GCGGGgcGgGcGUUGGccUCGu -3'
miRNA:   3'- -GCCGCCaCGCCCuuCgC-CGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 31889 0.68 0.600558
Target:  5'- gCGGCGGggGCGGacgcGGCGGCgGGgcCGu -3'
miRNA:   3'- -GCCGCCa-CGCCcu--UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 56349 0.68 0.600558
Target:  5'- uGGCGGccGCaGGggGCGGgUGGg--- -3'
miRNA:   3'- gCCGCCa-CGcCCuuCGCCgACCaagc -5'
23563 3' -60.6 NC_005261.1 + 22728 0.7 0.466758
Target:  5'- aGGUGGUGCGGGGgcuGCGGCg------ -3'
miRNA:   3'- gCCGCCACGCCCUu--CGCCGaccaagc -5'
23563 3' -60.6 NC_005261.1 + 102574 0.7 0.45775
Target:  5'- cCGGCaGGgaGCGGGAGcGgGGCUGGggCu -3'
miRNA:   3'- -GCCG-CCa-CGCCCUU-CgCCGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 33165 0.7 0.475858
Target:  5'- uCGGCGGacccUGcCGGGGAG-GGCUGGggaggggCGg -3'
miRNA:   3'- -GCCGCC----AC-GCCCUUCgCCGACCaa-----GC- -5'
23563 3' -60.6 NC_005261.1 + 55137 0.67 0.620392
Target:  5'- gCGGCGGcGCuGGAGGC-GCUGGaagCGc -3'
miRNA:   3'- -GCCGCCaCGcCCUUCGcCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 35164 0.67 0.619399
Target:  5'- gCGGCGGUGCugggcgccgugccGGGAcaGGC-GCUGGgcccugCGg -3'
miRNA:   3'- -GCCGCCACG-------------CCCU--UCGcCGACCaa----GC- -5'
23563 3' -60.6 NC_005261.1 + 70438 0.67 0.610467
Target:  5'- gGGCGGcgccgagGCGgaggaGGggGCGGCcgGGggCGg -3'
miRNA:   3'- gCCGCCa------CGC-----CCuuCGCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 28413 0.68 0.600558
Target:  5'- uCGGCGGccgccGCGgcGGAAGCGGCgccGGccgUCGc -3'
miRNA:   3'- -GCCGCCa----CGC--CCUUCGCCGa--CCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 137430 0.72 0.381199
Target:  5'- gGGCGcGcGUGGGggGCGGC-GGcgCGg -3'
miRNA:   3'- gCCGC-CaCGCCCuuCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 60759 0.72 0.381199
Target:  5'- gGGCGG-GCGGGGGcGCGGCUGc---- -3'
miRNA:   3'- gCCGCCaCGCCCUU-CGCCGACcaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.