miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 55756 0.68 0.590671
Target:  5'- aCGGCGGgGaCGGGGAcGgGGCcgGGggCGg -3'
miRNA:   3'- -GCCGCCaC-GCCCUU-CgCCGa-CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 31889 0.68 0.600558
Target:  5'- gCGGCGGggGCGGacgcGGCGGCgGGgcCGu -3'
miRNA:   3'- -GCCGCCa-CGCCcu--UCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 128304 0.68 0.580812
Target:  5'- gGGUGGgcucGcCGGGGcaGGcCGGCUGGggCGg -3'
miRNA:   3'- gCCGCCa---C-GCCCU--UC-GCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 5247 0.68 0.580812
Target:  5'- -aGCGGUGCGGGucGCGGUgcgcGGcgaCGa -3'
miRNA:   3'- gcCGCCACGCCCuuCGCCGa---CCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 126656 0.7 0.466758
Target:  5'- aCGGCGGgggGgGGGAAGgGGCaUGGc--- -3'
miRNA:   3'- -GCCGCCa--CgCCCUUCgCCG-ACCaagc -5'
23563 3' -60.6 NC_005261.1 + 7961 0.68 0.589684
Target:  5'- uGGCGGgggcgcGCGGGAcgcccccaguacgAGCcGCUGGcgCGg -3'
miRNA:   3'- gCCGCCa-----CGCCCU-------------UCGcCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 102574 0.7 0.45775
Target:  5'- cCGGCaGGgaGCGGGAGcGgGGCUGGggCu -3'
miRNA:   3'- -GCCG-CCa-CGCCCUU-CgCCGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 43038 0.7 0.45775
Target:  5'- gGGCGGcGCGGGucccAG-GGCUGGggCa -3'
miRNA:   3'- gCCGCCaCGCCCu---UCgCCGACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 12626 0.7 0.45775
Target:  5'- gGGCGG-GCGGGcAGUGGCgcuUUCGa -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaccAAGC- -5'
23563 3' -60.6 NC_005261.1 + 8949 0.7 0.448835
Target:  5'- gGGCGG-GCGGG--GCGGCgcggGGgcuugUCGg -3'
miRNA:   3'- gCCGCCaCGCCCuuCGCCGa---CCa----AGC- -5'
23563 3' -60.6 NC_005261.1 + 128516 0.7 0.448835
Target:  5'- gCGGCGGaGCgcugcugcuagGGGAGGgGGCggagcgcggGGUUCGg -3'
miRNA:   3'- -GCCGCCaCG-----------CCCUUCgCCGa--------CCAAGC- -5'
23563 3' -60.6 NC_005261.1 + 35305 0.68 0.580812
Target:  5'- gCGGCGGcgcUGCGcGAAGCGGCggaGGcgCu -3'
miRNA:   3'- -GCCGCC---ACGCcCUUCGCCGa--CCaaGc -5'
23563 3' -60.6 NC_005261.1 + 22728 0.7 0.466758
Target:  5'- aGGUGGUGCGGGGgcuGCGGCg------ -3'
miRNA:   3'- gCCGCCACGCCCUu--CGCCGaccaagc -5'
23563 3' -60.6 NC_005261.1 + 22341 0.66 0.728462
Target:  5'- aCGGCGGgGa-GGAGGCGGCgagGGa--- -3'
miRNA:   3'- -GCCGCCaCgcCCUUCGCCGa--CCaagc -5'
23563 3' -60.6 NC_005261.1 + 60857 0.66 0.728462
Target:  5'- aGGgGGUGCGccGGAGacgcGCGGcCUGGUg-- -3'
miRNA:   3'- gCCgCCACGC--CCUU----CGCC-GACCAagc -5'
23563 3' -60.6 NC_005261.1 + 9511 0.66 0.728462
Target:  5'- aCGGCGG-GCGGGcGG-GGCccgGGcgCGc -3'
miRNA:   3'- -GCCGCCaCGCCCuUCgCCGa--CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 34649 0.66 0.728462
Target:  5'- aCGGCGGcgagcgacggcGCGGGcGGCGGC-GGcaCGg -3'
miRNA:   3'- -GCCGCCa----------CGCCCuUCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 90227 0.66 0.728462
Target:  5'- cCGGCGGgGCGac-GGCGGCUGcgacgccguGUUCGc -3'
miRNA:   3'- -GCCGCCaCGCccuUCGCCGAC---------CAAGC- -5'
23563 3' -60.6 NC_005261.1 + 85917 0.66 0.728462
Target:  5'- aCGGCGaggaGUGCGacgacgacaauGGuGGCGGCUGGacCGc -3'
miRNA:   3'- -GCCGC----CACGC-----------CCuUCGCCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 37848 0.68 0.580812
Target:  5'- aCGGCGGcGUGguGGAGGCGGCcucGG-UCGc -3'
miRNA:   3'- -GCCGCCaCGC--CCUUCGCCGa--CCaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.