miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 3' -60.6 NC_005261.1 + 116000 0.66 0.679859
Target:  5'- gGGCGGgGCGGGGGuGCcGGCUcgaGGcUUCu -3'
miRNA:   3'- gCCGCCaCGCCCUU-CG-CCGA---CC-AAGc -5'
23563 3' -60.6 NC_005261.1 + 116443 0.66 0.699468
Target:  5'- cCGGCGGcUGCGGcGGcccgcgccgcGGCGGCUcgcccGGcgCGc -3'
miRNA:   3'- -GCCGCC-ACGCC-CU----------UCGCCGA-----CCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 3540 0.66 0.717901
Target:  5'- -cGCGGUcgcagucgcagucGuCGGGuccuGGCGGCUGGUgguUCGc -3'
miRNA:   3'- gcCGCCA-------------C-GCCCu---UCGCCGACCA---AGC- -5'
23563 3' -60.6 NC_005261.1 + 28689 0.66 0.718865
Target:  5'- gCGGCGGUugugGCGaGGggGCccgcGGCgGGcgCGc -3'
miRNA:   3'- -GCCGCCA----CGC-CCuuCG----CCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 8392 0.66 0.679859
Target:  5'- -cGCGGUGCuGGAGcGCGcGCUGGg--- -3'
miRNA:   3'- gcCGCCACGcCCUU-CGC-CGACCaagc -5'
23563 3' -60.6 NC_005261.1 + 42257 0.66 0.709197
Target:  5'- uCGGgGGUGauGGuggccGGCGcGCUGGggUCGa -3'
miRNA:   3'- -GCCgCCACgcCCu----UCGC-CGACCa-AGC- -5'
23563 3' -60.6 NC_005261.1 + 11755 0.66 0.709197
Target:  5'- uGGCGGcGCGGuacuaccgcGAGGCGagcgcGCUGGcgCGg -3'
miRNA:   3'- gCCGCCaCGCC---------CUUCGC-----CGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 60171 0.66 0.709197
Target:  5'- gGGcCGGcGCGGGGgccgGGCccgcgaccaccGGCUGGggCGg -3'
miRNA:   3'- gCC-GCCaCGCCCU----UCG-----------CCGACCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 79307 0.66 0.669994
Target:  5'- gGGCGGcgUGCGcGGgcGCG-CUGGUgcgCGc -3'
miRNA:   3'- gCCGCC--ACGC-CCuuCGCcGACCAa--GC- -5'
23563 3' -60.6 NC_005261.1 + 102123 0.66 0.699468
Target:  5'- gCGGCGGUcGCGGcccgaGAGUuaaguaugcaGGCUGGgggUCGc -3'
miRNA:   3'- -GCCGCCA-CGCCc----UUCG----------CCGACCa--AGC- -5'
23563 3' -60.6 NC_005261.1 + 34861 0.66 0.709197
Target:  5'- gCGGCGGcGCgcggccgagcugGGGGAGCGGCgcgcGGa--- -3'
miRNA:   3'- -GCCGCCaCG------------CCCUUCGCCGa---CCaagc -5'
23563 3' -60.6 NC_005261.1 + 35515 0.66 0.689686
Target:  5'- gCGGCGG-GCGcGGAcGCGGC-GGa--- -3'
miRNA:   3'- -GCCGCCaCGC-CCUuCGCCGaCCaagc -5'
23563 3' -60.6 NC_005261.1 + 10028 0.66 0.689686
Target:  5'- -aGCGGUGCGGGG-GCGG--GGUUg- -3'
miRNA:   3'- gcCGCCACGCCCUuCGCCgaCCAAgc -5'
23563 3' -60.6 NC_005261.1 + 19711 0.66 0.689686
Target:  5'- uCGGCGGgGCaGGGcgccucgccGAGCGGCgccagGGUcCGc -3'
miRNA:   3'- -GCCGCCaCG-CCC---------UUCGCCGa----CCAaGC- -5'
23563 3' -60.6 NC_005261.1 + 107112 0.66 0.670982
Target:  5'- gCGGCGGaagccgccgucggcgGCGGGGccgccgGGCGGCaUGGggCc -3'
miRNA:   3'- -GCCGCCa--------------CGCCCU------UCGCCG-ACCaaGc -5'
23563 3' -60.6 NC_005261.1 + 55819 0.66 0.699468
Target:  5'- aCGGCGGggccggcGCGGGGGacgacggccccGCGGgCUGGgcggCGc -3'
miRNA:   3'- -GCCGCCa------CGCCCUU-----------CGCC-GACCaa--GC- -5'
23563 3' -60.6 NC_005261.1 + 31116 0.66 0.699468
Target:  5'- uCGcCGGcGCGGuGgcGCGGCUGGgggCGc -3'
miRNA:   3'- -GCcGCCaCGCC-CuuCGCCGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 38372 0.66 0.706285
Target:  5'- gCGGCGGcGCGcGGcggccggugccgcuGGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCaCGC-CC--------------UUCGCCGaCCaaGC- -5'
23563 3' -60.6 NC_005261.1 + 51509 0.66 0.709197
Target:  5'- gCGGCGGacgagGCGGcGAAGCuggacgcGCUGGgcgCGu -3'
miRNA:   3'- -GCCGCCa----CGCC-CUUCGc------CGACCaa-GC- -5'
23563 3' -60.6 NC_005261.1 + 102187 0.66 0.669994
Target:  5'- gCGGUGGgcUGCGGGucGCGGgguaGGggCGg -3'
miRNA:   3'- -GCCGCC--ACGCCCuuCGCCga--CCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.