miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 126732 0.97 0.011816
Target:  5'- gUUCAAGUCCAAGCG-UCCGCGUCCCCa -3'
miRNA:   3'- -AAGUUCAGGUUCGCgAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 83926 0.8 0.181003
Target:  5'- --gGGGUCCGAGCGCgcggCCGCcaucgcuGUCCCCg -3'
miRNA:   3'- aagUUCAGGUUCGCGa---GGCG-------CAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 63279 0.8 0.181461
Target:  5'- cUCGAGcgcgCCGAGCGCgcccgcgCCGCaGUCCCCg -3'
miRNA:   3'- aAGUUCa---GGUUCGCGa------GGCG-CAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 108754 0.79 0.188926
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuucCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa------------GGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 4236 0.79 0.192758
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuuccCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa-------------GGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 18017 0.77 0.268903
Target:  5'- -gCGGGUCCccgcuAGCGCUCC-CGUCCUCg -3'
miRNA:   3'- aaGUUCAGGu----UCGCGAGGcGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 35454 0.77 0.281956
Target:  5'- -gCGGGUCUAGGCGCggcgcgCgCGCGUCCCg -3'
miRNA:   3'- aaGUUCAGGUUCGCGa-----G-GCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 44645 0.75 0.339169
Target:  5'- -gCGAGgucgCCGAGCGCgcgaUCGCGUCCCg -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa---GGCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 72982 0.75 0.354729
Target:  5'- --gGGGUCCGcgagcgcggccAGCGCgUCCGCGUCCgCCc -3'
miRNA:   3'- aagUUCAGGU-----------UCGCG-AGGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 1773 0.74 0.404353
Target:  5'- -gCGAGUCUggG-GCUgCCGCGUgCCCCu -3'
miRNA:   3'- aaGUUCAGGuuCgCGA-GGCGCA-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 25071 0.74 0.41304
Target:  5'- -cCAGGagCAGGCGCUCgGCGaUCUCCa -3'
miRNA:   3'- aaGUUCagGUUCGCGAGgCGC-AGGGG- -5'
23563 5' -57.1 NC_005261.1 + 670 0.73 0.421841
Target:  5'- -cCGAGUCCuGGCcCUCCGCGgacgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 105187 0.73 0.421841
Target:  5'- -cCGAGUCCuGGCcCUCCGCGgacgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 18641 0.73 0.439777
Target:  5'- -cCAGGUCCAAG-GCUCCcaggucucggGCGggCCCCa -3'
miRNA:   3'- aaGUUCAGGUUCgCGAGG----------CGCa-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 58131 0.73 0.447989
Target:  5'- -cCAAG-CCGguaccgcGGCGCgcgcgccggUCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCaGGU-------UCGCG---------AGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 69462 0.73 0.448906
Target:  5'- --gAAGUUCGacacGGCgGCUCCGCGgcgCCCCg -3'
miRNA:   3'- aagUUCAGGU----UCG-CGAGGCGCa--GGGG- -5'
23563 5' -57.1 NC_005261.1 + 120313 0.73 0.458139
Target:  5'- -gCGAGgcugucugCgAGGCGCgCUGCGUCCCCg -3'
miRNA:   3'- aaGUUCa-------GgUUCGCGaGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 88554 0.72 0.476904
Target:  5'- -cCGAGUacCCGAGCGCcggcgaCGCGUCCCg -3'
miRNA:   3'- aaGUUCA--GGUUCGCGag----GCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 99209 0.72 0.483561
Target:  5'- gUUCAGGUCCGaggacaccgcggcaGGCGCgUCgGCGUCgcgCCCg -3'
miRNA:   3'- -AAGUUCAGGU--------------UCGCG-AGgCGCAG---GGG- -5'
23563 5' -57.1 NC_005261.1 + 86899 0.72 0.505739
Target:  5'- ---uGGUCCGcgcgcGGCGCggacCCGCGUCCaCCg -3'
miRNA:   3'- aaguUCAGGU-----UCGCGa---GGCGCAGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.