miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 132647 0.69 0.678111
Target:  5'- cUCGAGg-CGGGCGCccUCgGCGcCCCCa -3'
miRNA:   3'- aAGUUCagGUUCGCG--AGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 27892 0.71 0.545285
Target:  5'- aUCAGGUgCGcGCGCagCGCGUCCgCg -3'
miRNA:   3'- aAGUUCAgGUuCGCGagGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 22789 0.71 0.565437
Target:  5'- --gGAGUCCGgccgcgAGCGCgagcucgggCCGCGgCCCCg -3'
miRNA:   3'- aagUUCAGGU------UCGCGa--------GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 63551 0.71 0.574569
Target:  5'- -cCAGcUCCc-GCGCggucgcgUCCGCGUCCCCg -3'
miRNA:   3'- aaGUUcAGGuuCGCG-------AGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 94788 0.7 0.585776
Target:  5'- -gCGAcGUCCAGGCGCcgagCCa-GUCCCCg -3'
miRNA:   3'- aaGUU-CAGGUUCGCGa---GGcgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 104453 0.7 0.596
Target:  5'- -gCGGGgCCcAGCGCUcgCCGCGggCCCCg -3'
miRNA:   3'- aaGUUCaGGuUCGCGA--GGCGCa-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 45471 0.7 0.637089
Target:  5'- cUCGgcccGGUCCGagcggcgcgggcGGCGCU-CGCuGUCCCCg -3'
miRNA:   3'- aAGU----UCAGGU------------UCGCGAgGCG-CAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 135550 0.69 0.667891
Target:  5'- --aAAG-CCGGcGCGCcgCCGgGUCCCCa -3'
miRNA:   3'- aagUUCaGGUU-CGCGa-GGCgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 105713 0.69 0.667891
Target:  5'- -cCGGGgCCGGGCGCggCGCGgaccCCCCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGagGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 10458 0.71 0.545285
Target:  5'- cUCGAGcagCCGGGCGuCUUCGCGcCCgCCg -3'
miRNA:   3'- aAGUUCa--GGUUCGC-GAGGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 80156 0.71 0.535296
Target:  5'- -gCGGGcCCuGGCGCcgccgUCCGCGUCaCCCu -3'
miRNA:   3'- aaGUUCaGGuUCGCG-----AGGCGCAG-GGG- -5'
23563 5' -57.1 NC_005261.1 + 68865 0.72 0.515517
Target:  5'- cUCgAGGUCCAGcGCGCgcgcggCCGCGUCgUCg -3'
miRNA:   3'- aAG-UUCAGGUU-CGCGa-----GGCGCAGgGG- -5'
23563 5' -57.1 NC_005261.1 + 108754 0.79 0.188926
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuucCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa------------GGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 44645 0.75 0.339169
Target:  5'- -gCGAGgucgCCGAGCGCgcgaUCGCGUCCCg -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa---GGCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 1773 0.74 0.404353
Target:  5'- -gCGAGUCUggG-GCUgCCGCGUgCCCCu -3'
miRNA:   3'- aaGUUCAGGuuCgCGA-GGCGCA-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 25071 0.74 0.41304
Target:  5'- -cCAGGagCAGGCGCUCgGCGaUCUCCa -3'
miRNA:   3'- aaGUUCagGUUCGCGAGgCGC-AGGGG- -5'
23563 5' -57.1 NC_005261.1 + 105187 0.73 0.421841
Target:  5'- -cCGAGUCCuGGCcCUCCGCGgacgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 58131 0.73 0.447989
Target:  5'- -cCAAG-CCGguaccgcGGCGCgcgcgccggUCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCaGGU-------UCGCG---------AGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 69462 0.73 0.448906
Target:  5'- --gAAGUUCGacacGGCgGCUCCGCGgcgCCCCg -3'
miRNA:   3'- aagUUCAGGU----UCG-CGAGGCGCa--GGGG- -5'
23563 5' -57.1 NC_005261.1 + 66259 0.72 0.505739
Target:  5'- -gCAccugCCGcGCGCUCCGCG-CCCCg -3'
miRNA:   3'- aaGUuca-GGUuCGCGAGGCGCaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.