miRNA display CGI


Results 1 - 20 of 684 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 105585 0.66 0.684763
Target:  5'- aGGGCCucggggCGCGUGCgCGCgacgaacgcCUgcggcacguccccgcUCCCGUGCg -3'
miRNA:   3'- -UCCGG------GCGCAUG-GCGa--------GA---------------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 36779 0.66 0.674956
Target:  5'- cGGCCCGUGcguugcgccgagacuUugCGC-CggCCgGCGCu -3'
miRNA:   3'- uCCGGGCGC---------------AugGCGaGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 126080 0.66 0.671024
Target:  5'- cGGCCUcgGCGgGCgCGCccaUCUUCgCGCGUa -3'
miRNA:   3'- uCCGGG--CGCaUG-GCG---AGAAGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 126606 1.11 0.000629
Target:  5'- cAGGCCCGCGUACCGCUCUUCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCAUGGCGAGAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 107818 0.66 0.680845
Target:  5'- cGGCCCuaGCGgccgccGCCGcCUCUgCCCGguCGCc -3'
miRNA:   3'- uCCGGG--CGCa-----UGGC-GAGAaGGGC--GCG- -5'
23564 3' -61.4 NC_005261.1 + 73005 0.66 0.680845
Target:  5'- -cGUCCGCGU-CCGCcCacCCCaGCGCg -3'
miRNA:   3'- ucCGGGCGCAuGGCGaGaaGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 62308 0.66 0.680845
Target:  5'- cGGGCgCGCGgcggccCCGCgg-UCCCccaGCGCc -3'
miRNA:   3'- -UCCGgGCGCau----GGCGagaAGGG---CGCG- -5'
23564 3' -61.4 NC_005261.1 + 58250 0.66 0.680845
Target:  5'- cGGCcaugCCGCGccgcGCCGCgc-UCgCCGCGCu -3'
miRNA:   3'- uCCG----GGCGCa---UGGCGagaAG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 118630 0.66 0.680845
Target:  5'- uGGCcgCCGCGgcggCGCUCUgggcCCCGgGCc -3'
miRNA:   3'- uCCG--GGCGCaug-GCGAGAa---GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 38921 0.66 0.676921
Target:  5'- cGGGCCCGCGcgccaagccggcgGCCGggCgggCCgcggCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa------------UGGCgaGaa-GG----GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 2399 0.66 0.680845
Target:  5'- cGGCgaGCGcgcCCGCgggcCCCGCGCg -3'
miRNA:   3'- uCCGggCGCau-GGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135017 0.66 0.680845
Target:  5'- cGGGCCCGCacgcgGCCGCggcggCgaggccgacgCCUGCGg -3'
miRNA:   3'- -UCCGGGCGca---UGGCGa----Gaa--------GGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 99582 0.66 0.684763
Target:  5'- uGGGCCUGCGcgcccagcgaguccACCGCgagCgucgUCCacaGCGCc -3'
miRNA:   3'- -UCCGGGCGCa-------------UGGCGa--Ga---AGGg--CGCG- -5'
23564 3' -61.4 NC_005261.1 + 93070 0.66 0.679864
Target:  5'- uGGCCaCGCGcGCCuuauauagauccaGCUCgUCCgcauCGCGCg -3'
miRNA:   3'- uCCGG-GCGCaUGG-------------CGAGaAGG----GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 75619 0.66 0.684763
Target:  5'- cGGCgUCGCGUacguggacgacguccACCGCgCggCCgGCGCg -3'
miRNA:   3'- uCCG-GGCGCA---------------UGGCGaGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 34114 0.66 0.680845
Target:  5'- -uGCCCGCuGUGCaagGCg---CCCGUGCg -3'
miRNA:   3'- ucCGGGCG-CAUGg--CGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 102652 0.66 0.678883
Target:  5'- cGGCCCGCagcaccuccuCCGCggcgCCCaGCGCc -3'
miRNA:   3'- uCCGGGCGcau-------GGCGagaaGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 103447 0.66 0.671024
Target:  5'- -cGCCuCGCGgucgGCCGC-CgcgCCCGuCGCc -3'
miRNA:   3'- ucCGG-GCGCa---UGGCGaGaa-GGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 122197 0.66 0.680845
Target:  5'- -cGCCCuGCGUGuuGCUCUUCCaagaCGa -3'
miRNA:   3'- ucCGGG-CGCAUggCGAGAAGGgc--GCg -5'
23564 3' -61.4 NC_005261.1 + 65839 0.66 0.680845
Target:  5'- -uGCCCGaGUGCCGCgaguagCggUCCGCGg -3'
miRNA:   3'- ucCGGGCgCAUGGCGa-----GaaGGGCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.