miRNA display CGI


Results 21 - 40 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 40641 0.75 0.213383
Target:  5'- -cGCCCGCuccgcCCGCUCcgCCCGCGCc -3'
miRNA:   3'- ucCGGGCGcau--GGCGAGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 54708 0.75 0.213383
Target:  5'- gGGGCUggagggCGCGUGCCGCUUccaCCgGCGCg -3'
miRNA:   3'- -UCCGG------GCGCAUGGCGAGaa-GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 133698 0.77 0.159543
Target:  5'- aGGGCCCgGCGcccucGCCGCggcgCCCGCGCg -3'
miRNA:   3'- -UCCGGG-CGCa----UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 114736 0.77 0.155657
Target:  5'- aGGGCCCGCGccUGCCcagGCggg-CCCGCGCa -3'
miRNA:   3'- -UCCGGGCGC--AUGG---CGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 110502 0.77 0.151858
Target:  5'- -uGCCCGCGcgucuCCGCUCcUCCCGCGg -3'
miRNA:   3'- ucCGGGCGCau---GGCGAGaAGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 78165 0.78 0.144511
Target:  5'- -aGCCCGCGgaccggccGCCGCUCUUCgCCGcCGCc -3'
miRNA:   3'- ucCGGGCGCa-------UGGCGAGAAG-GGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 134791 0.78 0.14096
Target:  5'- cGGCCCGCGcgcCCGC-CUggacgcuggCCCGCGCg -3'
miRNA:   3'- uCCGGGCGCau-GGCGaGAa--------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135737 0.78 0.130782
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
23564 3' -61.4 NC_005261.1 + 135832 0.79 0.124379
Target:  5'- gGGGCCCGCGgGCgCGCUCgccgCCaGCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG-GCGAGaa--GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 51006 0.79 0.115317
Target:  5'- cGGUgCGCGUGCCGCUgUacCCCGUGCa -3'
miRNA:   3'- uCCGgGCGCAUGGCGAgAa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 116456 0.77 0.159543
Target:  5'- cGGCCCGCGccgcgGCgGCUCgcCCgGCGCg -3'
miRNA:   3'- uCCGGGCGCa----UGgCGAGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 122804 0.77 0.167577
Target:  5'- cGGCCCGCGcccgGCCGaCUCUgggcucuacuUUCUGCGCg -3'
miRNA:   3'- uCCGGGCGCa---UGGC-GAGA----------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 20502 0.75 0.213383
Target:  5'- cGGCgCCaGCGcgcgGCCGCUUgcgggCCCGCGCg -3'
miRNA:   3'- uCCG-GG-CGCa---UGGCGAGaa---GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 104408 0.76 0.199089
Target:  5'- gGGGCCCGCGccccccgGCCGCccaaagacaagcccgCcgCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa------UGGCGa--------------GaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 33956 0.76 0.193889
Target:  5'- gAGGCCCGCGcagccgccgagACCGCggcgCUCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa----------UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 6293 0.76 0.189265
Target:  5'- cGGGCgCGgGcACCGCgg-UCCCGCGCg -3'
miRNA:   3'- -UCCGgGCgCaUGGCGagaAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 79427 0.76 0.184739
Target:  5'- uGGCgcggCGCGUGCCgGC-CUUCCUGCGCg -3'
miRNA:   3'- uCCGg---GCGCAUGG-CGaGAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 118100 0.76 0.180308
Target:  5'- gAGcGCUCGCGgaGCCGCUgCgggCCCGCGCg -3'
miRNA:   3'- -UC-CGGGCGCa-UGGCGA-Gaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 108765 0.76 0.180308
Target:  5'- -aGCgCCGCGUACUGCU--UCCCGCGUc -3'
miRNA:   3'- ucCG-GGCGCAUGGCGAgaAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 75919 0.76 0.175972
Target:  5'- gGGGaCCGCGggGCCGCcgCgcgCCCGCGCg -3'
miRNA:   3'- -UCCgGGCGCa-UGGCGa-Gaa-GGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.