miRNA display CGI


Results 41 - 60 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 63049 0.66 0.671024
Target:  5'- aAGGUCCGCG-ACaUGCg---CCCGuCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG-GCGagaaGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 99687 0.66 0.671024
Target:  5'- uGGCCgCGCGccGgCGCUgUgCCCgGCGCg -3'
miRNA:   3'- uCCGG-GCGCa-UgGCGAgAaGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 66239 0.66 0.671024
Target:  5'- aAGGCCagggGCGacgcugcgcaccUGCCGCgcgCUccgcgcCCCGCGCc -3'
miRNA:   3'- -UCCGGg---CGC------------AUGGCGa--GAa-----GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 109759 0.66 0.671024
Target:  5'- cAGGUCgaGCGUgGCCgGCUCggCCCGC-Cg -3'
miRNA:   3'- -UCCGGg-CGCA-UGG-CGAGaaGGGCGcG- -5'
23564 3' -61.4 NC_005261.1 + 7763 0.66 0.671024
Target:  5'- gAGGCacgCCGCGaGCCGCUCgggCCaGuCGUa -3'
miRNA:   3'- -UCCG---GGCGCaUGGCGAGaa-GGgC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 68684 0.66 0.67004
Target:  5'- gGGGCCgccguccccagcgCGCGcGCCaGCg---CCCGCGCc -3'
miRNA:   3'- -UCCGG-------------GCGCaUGG-CGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 17072 0.66 0.67004
Target:  5'- gAGcGCCCGgGcaacccUACCcgguccuacucgcGCUCgcgCCCGCGCc -3'
miRNA:   3'- -UC-CGGGCgC------AUGG-------------CGAGaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 77268 0.66 0.669056
Target:  5'- -cGCUCGCGgGCgGCgucugcauugcgCUUCCCGuCGCg -3'
miRNA:   3'- ucCGGGCGCaUGgCGa-----------GAAGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 33066 0.66 0.667087
Target:  5'- cGGGCCCcGUGgacGCCGCcCUcgagccgcgaggaCCUGCGCg -3'
miRNA:   3'- -UCCGGG-CGCa--UGGCGaGAa------------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 56074 0.66 0.66216
Target:  5'- uGGGCgaGCaGU-CCGCUCgcuacuuccagcggcUCCUGCGCg -3'
miRNA:   3'- -UCCGggCG-CAuGGCGAGa--------------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 54910 0.66 0.661174
Target:  5'- cGGgCgGCGUggcGCCGCccgagCUgcacgacCCCGCGCa -3'
miRNA:   3'- uCCgGgCGCA---UGGCGa----GAa------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 42072 0.66 0.661174
Target:  5'- uGGGCaCgCGCGgcacgACgGC-CUUCUCGUGCc -3'
miRNA:   3'- -UCCG-G-GCGCa----UGgCGaGAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 3364 0.66 0.661174
Target:  5'- gGGGCCCGCGggGgCGCgggCgccuugUCCC-CGUc -3'
miRNA:   3'- -UCCGGGCGCa-UgGCGa--Ga-----AGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 123396 0.66 0.661174
Target:  5'- -cGCCUGC-UGCCGUgc-UCCCgGCGCa -3'
miRNA:   3'- ucCGGGCGcAUGGCGagaAGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 63622 0.66 0.661174
Target:  5'- aAGGCCgGCGcgaugaaguuCCGCUCgUCCgGCa- -3'
miRNA:   3'- -UCCGGgCGCau--------GGCGAGaAGGgCGcg -5'
23564 3' -61.4 NC_005261.1 + 93469 0.66 0.661174
Target:  5'- cGGCucCCGCu--CCGCUCccgggUCgCGCGCa -3'
miRNA:   3'- uCCG--GGCGcauGGCGAGa----AGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 67891 0.66 0.661174
Target:  5'- cGGUCCcCGgcCCGCUCgaCgCGUGCg -3'
miRNA:   3'- uCCGGGcGCauGGCGAGaaGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 136277 0.66 0.661174
Target:  5'- cAGGCgcacguguacCUGCGcGCCGCggugCUgCCCGCGg -3'
miRNA:   3'- -UCCG----------GGCGCaUGGCGa---GAaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 64863 0.66 0.661174
Target:  5'- uGG-CCGCGUgcuggcGCCGC-CUgagCCgGCGCc -3'
miRNA:   3'- uCCgGGCGCA------UGGCGaGAa--GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 62634 0.66 0.661174
Target:  5'- -cGUCCGCGU-CCGCgg--CgCGCGCg -3'
miRNA:   3'- ucCGGGCGCAuGGCGagaaGgGCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.