Results 41 - 60 of 684 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23564 | 3' | -61.4 | NC_005261.1 | + | 63049 | 0.66 | 0.671024 |
Target: 5'- aAGGUCCGCG-ACaUGCg---CCCGuCGCg -3' miRNA: 3'- -UCCGGGCGCaUG-GCGagaaGGGC-GCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 99687 | 0.66 | 0.671024 |
Target: 5'- uGGCCgCGCGccGgCGCUgUgCCCgGCGCg -3' miRNA: 3'- uCCGG-GCGCa-UgGCGAgAaGGG-CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 66239 | 0.66 | 0.671024 |
Target: 5'- aAGGCCagggGCGacgcugcgcaccUGCCGCgcgCUccgcgcCCCGCGCc -3' miRNA: 3'- -UCCGGg---CGC------------AUGGCGa--GAa-----GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 109759 | 0.66 | 0.671024 |
Target: 5'- cAGGUCgaGCGUgGCCgGCUCggCCCGC-Cg -3' miRNA: 3'- -UCCGGg-CGCA-UGG-CGAGaaGGGCGcG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 7763 | 0.66 | 0.671024 |
Target: 5'- gAGGCacgCCGCGaGCCGCUCgggCCaGuCGUa -3' miRNA: 3'- -UCCG---GGCGCaUGGCGAGaa-GGgC-GCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 68684 | 0.66 | 0.67004 |
Target: 5'- gGGGCCgccguccccagcgCGCGcGCCaGCg---CCCGCGCc -3' miRNA: 3'- -UCCGG-------------GCGCaUGG-CGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 17072 | 0.66 | 0.67004 |
Target: 5'- gAGcGCCCGgGcaacccUACCcgguccuacucgcGCUCgcgCCCGCGCc -3' miRNA: 3'- -UC-CGGGCgC------AUGG-------------CGAGaa-GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 77268 | 0.66 | 0.669056 |
Target: 5'- -cGCUCGCGgGCgGCgucugcauugcgCUUCCCGuCGCg -3' miRNA: 3'- ucCGGGCGCaUGgCGa-----------GAAGGGC-GCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 33066 | 0.66 | 0.667087 |
Target: 5'- cGGGCCCcGUGgacGCCGCcCUcgagccgcgaggaCCUGCGCg -3' miRNA: 3'- -UCCGGG-CGCa--UGGCGaGAa------------GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 56074 | 0.66 | 0.66216 |
Target: 5'- uGGGCgaGCaGU-CCGCUCgcuacuuccagcggcUCCUGCGCg -3' miRNA: 3'- -UCCGggCG-CAuGGCGAGa--------------AGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 54910 | 0.66 | 0.661174 |
Target: 5'- cGGgCgGCGUggcGCCGCccgagCUgcacgacCCCGCGCa -3' miRNA: 3'- uCCgGgCGCA---UGGCGa----GAa------GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 42072 | 0.66 | 0.661174 |
Target: 5'- uGGGCaCgCGCGgcacgACgGC-CUUCUCGUGCc -3' miRNA: 3'- -UCCG-G-GCGCa----UGgCGaGAAGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 3364 | 0.66 | 0.661174 |
Target: 5'- gGGGCCCGCGggGgCGCgggCgccuugUCCC-CGUc -3' miRNA: 3'- -UCCGGGCGCa-UgGCGa--Ga-----AGGGcGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 123396 | 0.66 | 0.661174 |
Target: 5'- -cGCCUGC-UGCCGUgc-UCCCgGCGCa -3' miRNA: 3'- ucCGGGCGcAUGGCGagaAGGG-CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 63622 | 0.66 | 0.661174 |
Target: 5'- aAGGCCgGCGcgaugaaguuCCGCUCgUCCgGCa- -3' miRNA: 3'- -UCCGGgCGCau--------GGCGAGaAGGgCGcg -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 93469 | 0.66 | 0.661174 |
Target: 5'- cGGCucCCGCu--CCGCUCccgggUCgCGCGCa -3' miRNA: 3'- uCCG--GGCGcauGGCGAGa----AGgGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 67891 | 0.66 | 0.661174 |
Target: 5'- cGGUCCcCGgcCCGCUCgaCgCGUGCg -3' miRNA: 3'- uCCGGGcGCauGGCGAGaaGgGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 136277 | 0.66 | 0.661174 |
Target: 5'- cAGGCgcacguguacCUGCGcGCCGCggugCUgCCCGCGg -3' miRNA: 3'- -UCCG----------GGCGCaUGGCGa---GAaGGGCGCg -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 64863 | 0.66 | 0.661174 |
Target: 5'- uGG-CCGCGUgcuggcGCCGC-CUgagCCgGCGCc -3' miRNA: 3'- uCCgGGCGCA------UGGCGaGAa--GGgCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 62634 | 0.66 | 0.661174 |
Target: 5'- -cGUCCGCGU-CCGCgg--CgCGCGCg -3' miRNA: 3'- ucCGGGCGCAuGGCGagaaGgGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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