miRNA display CGI


Results 101 - 120 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 20902 0.68 0.909813
Target:  5'- -gGCgCGGGcaaGGAUGCGCUUGcugcccGCGCCGg -3'
miRNA:   3'- gaCG-GUCU---UUUACGCGGACa-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127240 0.68 0.909813
Target:  5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 44190 0.68 0.909813
Target:  5'- -cGCUGGggGGgcGCGCCgGgcCGCCGa -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 134376 0.68 0.909813
Target:  5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 34024 0.68 0.914717
Target:  5'- -cGCCGcgcgcgaGCGCCUGgACGCCGu -3'
miRNA:   3'- gaCGGUcuuuua-CGCGGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 76709 0.68 0.915917
Target:  5'- uUGCCGGAGAAggcccGgGCCU---CGCCGg -3'
miRNA:   3'- gACGGUCUUUUa----CgCGGAcauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 32111 0.68 0.896853
Target:  5'- uUGCCGGcgcgcgcGCGCCggcgACGCCGg -3'
miRNA:   3'- gACGGUCuuuua--CGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 29868 0.68 0.896853
Target:  5'- -cGCgGGcaGGGAUGCGCCUGcgACGgCGg -3'
miRNA:   3'- gaCGgUC--UUUUACGCGGACa-UGCgGC- -5'
23564 5' -53.2 NC_005261.1 + 43431 0.68 0.896853
Target:  5'- -cGCCGgcGggGAgcuggcucgGCGCCUGgacguCGCCGg -3'
miRNA:   3'- gaCGGU--CuuUUa--------CGCGGACau---GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 36756 0.68 0.896853
Target:  5'- -gGCCAGcug--GCGCCccUGcACGCCGg -3'
miRNA:   3'- gaCGGUCuuuuaCGCGG--ACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 33686 0.68 0.915917
Target:  5'- cCUGgCGGAcgccAAGcUGCGCCUGgugGCgGCCGc -3'
miRNA:   3'- -GACgGUCU----UUU-ACGCGGACa--UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 3843 0.68 0.896853
Target:  5'- gCUGgCGGcAGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- -GACgGUCuUUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 81443 0.68 0.882911
Target:  5'- gCUGCCGGAAgugggcaaccGcgGCGUCUGagaAgGCCGg -3'
miRNA:   3'- -GACGGUCUU----------UuaCGCGGACa--UgCGGC- -5'
23564 5' -53.2 NC_005261.1 + 103287 0.68 0.894142
Target:  5'- -cGCCGGGcccGGGUcGCGCCggccgccccccgcGUGCGCCGc -3'
miRNA:   3'- gaCGGUCU---UUUA-CGCGGa------------CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 30001 0.69 0.860235
Target:  5'- -cGCCGGGcacGUGCGCCaugcUGgagcGCGCCGu -3'
miRNA:   3'- gaCGGUCUuu-UACGCGG----ACa---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 37955 0.69 0.852229
Target:  5'- uCUGCCGcuucGUGCGCCaccgGcGCGCCGa -3'
miRNA:   3'- -GACGGUcuuuUACGCGGa---CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 94642 0.69 0.878541
Target:  5'- -cGCCGGAGAcgGCGUCgcgcacggcgaaGCGCCGc -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGaca---------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 41600 0.69 0.852229
Target:  5'- cCUGCgAGAAGAUcgcccgGCGgCUGcGCGCCa -3'
miRNA:   3'- -GACGgUCUUUUA------CGCgGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 46920 0.69 0.844011
Target:  5'- -gGUCAGGugcgcGAUGCGCUUGUugGCg- -3'
miRNA:   3'- gaCGGUCUu----UUACGCGGACAugCGgc -5'
23564 5' -53.2 NC_005261.1 + 71713 0.69 0.852229
Target:  5'- gCUGCUGGAGAagGCGCCgccaaUGU-CGCUGc -3'
miRNA:   3'- -GACGGUCUUUuaCGCGG-----ACAuGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.