Results 81 - 100 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23564 | 5' | -53.2 | NC_005261.1 | + | 58699 | 0.68 | 0.915917 |
Target: 5'- -cGUCAGGGc--GCGCCgcugagagGUGCGCCa -3' miRNA: 3'- gaCGGUCUUuuaCGCGGa-------CAUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 29859 | 0.68 | 0.909813 |
Target: 5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3' miRNA: 3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 55258 | 0.68 | 0.909813 |
Target: 5'- -cGCgAGGAGGucUGCGCCcccugGcGCGCCGg -3' miRNA: 3'- gaCGgUCUUUU--ACGCGGa----CaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 22723 | 0.68 | 0.909813 |
Target: 5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3' miRNA: 3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 80881 | 0.68 | 0.909813 |
Target: 5'- -cGCgGGGAGGUcGUGCCgGUgaacgGCGCCGg -3' miRNA: 3'- gaCGgUCUUUUA-CGCGGaCA-----UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 134376 | 0.68 | 0.909813 |
Target: 5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3' miRNA: 3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 12124 | 0.68 | 0.890002 |
Target: 5'- -cGCCAGGAug-GCGCCcgc-CGCCGc -3' miRNA: 3'- gaCGGUCUUuuaCGCGGacauGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 127240 | 0.68 | 0.909813 |
Target: 5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3' miRNA: 3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 43431 | 0.68 | 0.896853 |
Target: 5'- -cGCCGgcGggGAgcuggcucgGCGCCUGgacguCGCCGg -3' miRNA: 3'- gaCGGU--CuuUUa--------CGCGGACau---GCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 28765 | 0.68 | 0.896853 |
Target: 5'- -gGCCGGGg---GCGCCUGggccgcgGCGCgGg -3' miRNA: 3'- gaCGGUCUuuuaCGCGGACa------UGCGgC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 3843 | 0.68 | 0.896853 |
Target: 5'- gCUGgCGGcAGcgGCGCCg--GCGCCGc -3' miRNA: 3'- -GACgGUCuUUuaCGCGGacaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 81443 | 0.68 | 0.882911 |
Target: 5'- gCUGCCGGAAgugggcaaccGcgGCGUCUGagaAgGCCGg -3' miRNA: 3'- -GACGGUCUU----------UuaCGCGGACa--UgCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 29868 | 0.68 | 0.896853 |
Target: 5'- -cGCgGGcaGGGAUGCGCCUGcgACGgCGg -3' miRNA: 3'- gaCGgUC--UUUUACGCGGACa-UGCgGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 113649 | 0.68 | 0.882911 |
Target: 5'- -cGaCCAGGA---GCGCCUGaucgaccucUGCGCCGa -3' miRNA: 3'- gaC-GGUCUUuuaCGCGGAC---------AUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 54879 | 0.68 | 0.882911 |
Target: 5'- -gGCCGGAuGAUGCGUCgGcGCGCgCGu -3' miRNA: 3'- gaCGGUCUuUUACGCGGaCaUGCG-GC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 36756 | 0.68 | 0.896853 |
Target: 5'- -gGCCAGcug--GCGCCccUGcACGCCGg -3' miRNA: 3'- gaCGGUCuuuuaCGCGG--ACaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 53325 | 0.68 | 0.890002 |
Target: 5'- -gGCCgcAGGu-GUGCGCCUcUGCGCCc -3' miRNA: 3'- gaCGG--UCUuuUACGCGGAcAUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 33686 | 0.68 | 0.915917 |
Target: 5'- cCUGgCGGAcgccAAGcUGCGCCUGgugGCgGCCGc -3' miRNA: 3'- -GACgGUCU----UUU-ACGCGGACa--UG-CGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 76709 | 0.68 | 0.915917 |
Target: 5'- uUGCCGGAGAAggcccGgGCCU---CGCCGg -3' miRNA: 3'- gACGGUCUUUUa----CgCGGAcauGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 34024 | 0.68 | 0.914717 |
Target: 5'- -cGCCGcgcgcgaGCGCCUGgACGCCGu -3' miRNA: 3'- gaCGGUcuuuua-CGCGGACaUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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