miRNA display CGI


Results 101 - 120 of 183 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 44190 0.68 0.909813
Target:  5'- -cGCUGGggGGgcGCGCCgGgcCGCCGa -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 80881 0.68 0.909813
Target:  5'- -cGCgGGGAGGUcGUGCCgGUgaacgGCGCCGg -3'
miRNA:   3'- gaCGgUCUUUUA-CGCGGaCA-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 134376 0.68 0.909813
Target:  5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 29859 0.68 0.909813
Target:  5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 58699 0.68 0.915917
Target:  5'- -cGUCAGGGc--GCGCCgcugagagGUGCGCCa -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGa-------CAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 109449 0.68 0.918288
Target:  5'- -cGCCAGAGAGgcaacccccgcuucGCGCgUGcGCGCCc -3'
miRNA:   3'- gaCGGUCUUUUa-------------CGCGgACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 22723 0.68 0.909813
Target:  5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 133282 0.68 0.896853
Target:  5'- -gGCCGGGg---GCGCCUGggccgcgGCGCgGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa------UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 33686 0.68 0.915917
Target:  5'- cCUGgCGGAcgccAAGcUGCGCCUGgugGCgGCCGc -3'
miRNA:   3'- -GACgGUCU----UUU-ACGCGGACa--UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 76709 0.68 0.915917
Target:  5'- uUGCCGGAGAAggcccGgGCCU---CGCCGg -3'
miRNA:   3'- gACGGUCUUUUa----CgCGGAcauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 34024 0.68 0.914717
Target:  5'- -cGCCGcgcgcgaGCGCCUGgACGCCGu -3'
miRNA:   3'- gaCGGUcuuuua-CGCGGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 106473 0.67 0.932707
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 3731 0.67 0.932707
Target:  5'- gCUGCCGGAcgcgccGGcgGCGCacc-GCGCCGc -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 42385 0.67 0.932707
Target:  5'- gUGCCGGcccagcUGCGCCUGcACGUgGu -3'
miRNA:   3'- gACGGUCuuuu--ACGCGGACaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 120360 0.67 0.932707
Target:  5'- -cGCUGGAcgGUGCGCgacgGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuUACGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 70100 0.67 0.932707
Target:  5'- -cGCCGgcGAGAAgcucgGCGCCUcGUGC-CCGg -3'
miRNA:   3'- gaCGGU--CUUUUa----CGCGGA-CAUGcGGC- -5'
23564 5' -53.2 NC_005261.1 + 77540 0.67 0.936797
Target:  5'- aUGCCGGGcugguAcgGCGCCgccgccagugGCGCCGc -3'
miRNA:   3'- gACGGUCUu----UuaCGCGGaca-------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 29115 0.67 0.937794
Target:  5'- -cGCCgAGggGAgcccugGCGCCgGgggGCGCCc -3'
miRNA:   3'- gaCGG-UCuuUUa-----CGCGGaCa--UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 51643 0.67 0.927365
Target:  5'- -cGCCAaGGAcgGCGCCgc--CGCCGg -3'
miRNA:   3'- gaCGGUcUUUuaCGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 108248 0.67 0.932707
Target:  5'- gCUGCCGGAcgcgccGGcgGCGCacc-GCGCCGc -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGgacaUGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.