miRNA display CGI


Results 141 - 160 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 1956 0.67 0.932707
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 68525 0.67 0.931659
Target:  5'- cCUGCCGGcgccgccgGCGCCcGcGCGCCc -3'
miRNA:   3'- -GACGGUCuuuua---CGCGGaCaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 135605 0.67 0.927365
Target:  5'- gUGCUGGAGAAccUGCGgCUGaagcugGCGCCc -3'
miRNA:   3'- gACGGUCUUUU--ACGCgGACa-----UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 108737 0.67 0.927365
Target:  5'- -gGCCAGcgGcgGCGCCgcgGCGuCCGc -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGC-GGC- -5'
23564 5' -53.2 NC_005261.1 + 86488 0.67 0.927365
Target:  5'- -gGCCGGGccg-GCGCCUGUcuGCGgCa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACA--UGCgGc -5'
23564 5' -53.2 NC_005261.1 + 68742 0.67 0.921768
Target:  5'- -gGCgGGAAGAaGCGCCcGccgggGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGaCa----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 85711 0.67 0.921768
Target:  5'- gCUGCCcgcAGAAGAUGCcgugGCaCUGgcugaGCGCCa -3'
miRNA:   3'- -GACGG---UCUUUUACG----CG-GACa----UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 69520 0.67 0.921768
Target:  5'- gCUGCCGGAGcugGCGCgg--GCGCUGg -3'
miRNA:   3'- -GACGGUCUUuuaCGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 109057 0.67 0.921194
Target:  5'- -cGCCAGGuagcccAGcgGCGCCUcggcgaucaugccGUugGCCa -3'
miRNA:   3'- gaCGGUCU------UUuaCGCGGA-------------CAugCGGc -5'
23564 5' -53.2 NC_005261.1 + 64041 0.66 0.959485
Target:  5'- -gGCgCGGcuc-UGCGCCgcgugGUGCGCCa -3'
miRNA:   3'- gaCG-GUCuuuuACGCGGa----CAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 51976 0.66 0.955637
Target:  5'- gCUGCUGGAccgcgGCGCCgc--CGCCGa -3'
miRNA:   3'- -GACGGUCUuuua-CGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 44862 0.66 0.955637
Target:  5'- -cGCgAGGAAGaGCGCCgccgcGaGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 126503 0.66 0.955637
Target:  5'- gCUGCCGcAGGcgGUcuGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUcUUUuaCG--CGGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 104403 0.66 0.951547
Target:  5'- -cGCCAuAAAGcGCGCCgaaacgGCGCCGc -3'
miRNA:   3'- gaCGGUcUUUUaCGCGGaca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127866 0.66 0.951547
Target:  5'- -cGCCAGGgcacgagcggGAGUcGCGCCg--GCGCCc -3'
miRNA:   3'- gaCGGUCU----------UUUA-CGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 93674 0.66 0.951547
Target:  5'- -cGCgGGcgGcgGCGCCggcgGgGCGCCGg -3'
miRNA:   3'- gaCGgUCuuUuaCGCGGa---CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 90732 0.66 0.951547
Target:  5'- -cGCUGGGcc--GCGCCUGagGCGCUGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 65162 0.66 0.951547
Target:  5'- -cGCgCAGAAGGUGCGCUcgc-UGCCGu -3'
miRNA:   3'- gaCG-GUCUUUUACGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 22656 0.66 0.951547
Target:  5'- -cGCUGGcg---GCGCCUGggcgGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 47252 0.66 0.951547
Target:  5'- -aGCCgAGGAccUGCGCCggccCGCCGg -3'
miRNA:   3'- gaCGG-UCUUuuACGCGGacauGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.