miRNA display CGI


Results 141 - 160 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 86488 0.67 0.927365
Target:  5'- -gGCCGGGccg-GCGCCUGUcuGCGgCa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACA--UGCgGc -5'
23564 5' -53.2 NC_005261.1 + 108737 0.67 0.927365
Target:  5'- -gGCCAGcgGcgGCGCCgcgGCGuCCGc -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGC-GGC- -5'
23564 5' -53.2 NC_005261.1 + 75756 0.67 0.942629
Target:  5'- uCUGCaaCGGGGAcgcgGUGUGCCUGcuucCGCCGc -3'
miRNA:   3'- -GACG--GUCUUU----UACGCGGACau--GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 135605 0.67 0.927365
Target:  5'- gUGCUGGAGAAccUGCGgCUGaagcugGCGCCc -3'
miRNA:   3'- gACGGUCUUUU--ACGCgGACa-----UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 68525 0.67 0.931659
Target:  5'- cCUGCCGGcgccgccgGCGCCcGcGCGCCc -3'
miRNA:   3'- -GACGGUCuuuua---CGCGGaCaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 120360 0.67 0.932707
Target:  5'- -cGCUGGAcgGUGCGCgacgGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuUACGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 42385 0.67 0.932707
Target:  5'- gUGCCGGcccagcUGCGCCUGcACGUgGu -3'
miRNA:   3'- gACGGUCuuuu--ACGCGGACaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 3731 0.67 0.932707
Target:  5'- gCUGCCGGAcgcgccGGcgGCGCacc-GCGCCGc -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 138113 0.67 0.937794
Target:  5'- --aCCAGggGcgGCGCCg--GCGCgGg -3'
miRNA:   3'- gacGGUCuuUuaCGCGGacaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 44862 0.66 0.955637
Target:  5'- -cGCgAGGAAGaGCGCCgccgcGaGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 126503 0.66 0.955637
Target:  5'- gCUGCCGcAGGcgGUcuGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUcUUUuaCG--CGGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 104403 0.66 0.951547
Target:  5'- -cGCCAuAAAGcGCGCCgaaacgGCGCCGc -3'
miRNA:   3'- gaCGGUcUUUUaCGCGGaca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 93674 0.66 0.951547
Target:  5'- -cGCgGGcgGcgGCGCCggcgGgGCGCCGg -3'
miRNA:   3'- gaCGgUCuuUuaCGCGGa---CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127866 0.66 0.951547
Target:  5'- -cGCCAGGgcacgagcggGAGUcGCGCCg--GCGCCc -3'
miRNA:   3'- gaCGGUCU----------UUUA-CGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 90732 0.66 0.951547
Target:  5'- -cGCUGGGcc--GCGCCUGagGCGCUGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 65162 0.66 0.951547
Target:  5'- -cGCgCAGAAGGUGCGCUcgc-UGCCGu -3'
miRNA:   3'- gaCG-GUCUUUUACGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 47252 0.66 0.951547
Target:  5'- -aGCCgAGGAccUGCGCCggccCGCCGg -3'
miRNA:   3'- gaCGG-UCUUuuACGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 95768 0.66 0.947212
Target:  5'- -cGCCGGGAGccucGCGCgCU--GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUua--CGCG-GAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 124031 0.66 0.946765
Target:  5'- -aGCCGGGcgccucuGAGUGCGCUa--GCGCCa -3'
miRNA:   3'- gaCGGUCU-------UUUACGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 72492 0.66 0.945409
Target:  5'- -cGCCAGGA---GCGCCgcgcgaagcggGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGaca--------UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.