Results 181 - 183 of 183 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23564 | 5' | -53.2 | NC_005261.1 | + | 136306 | 0.66 | 0.963098 |
Target: 5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3' miRNA: 3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5' |
|||||||
23564 | 5' | -53.2 | NC_005261.1 | + | 137572 | 0.68 | 0.903457 |
Target: 5'- -gGCCAGGAcucgGCGCCgGggacgcgGCGCUGg -3' miRNA: 3'- gaCGGUCUUuua-CGCGGaCa------UGCGGC- -5' |
|||||||
23564 | 5' | -53.2 | NC_005261.1 | + | 138113 | 0.67 | 0.937794 |
Target: 5'- --aCCAGggGcgGCGCCg--GCGCgGg -3' miRNA: 3'- gacGGUCuuUuaCGCGGacaUGCGgC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home