miRNA display CGI


Results 121 - 140 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 86488 0.67 0.927365
Target:  5'- -gGCCGGGccg-GCGCCUGUcuGCGgCa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACA--UGCgGc -5'
23564 5' -53.2 NC_005261.1 + 86586 0.67 0.937794
Target:  5'- -aGCCGGcgGcgGCGCCguccuugGCGUCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGaca----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 87149 0.66 0.959485
Target:  5'- -gGCgagCAGGAAcaGgGCCgUGUACGCCGa -3'
miRNA:   3'- gaCG---GUCUUUuaCgCGG-ACAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 87428 0.66 0.963098
Target:  5'- -cGCCGGcGAagGCGCCgaagccgaaGCGCCGc -3'
miRNA:   3'- gaCGGUCuUUuaCGCGGaca------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 89949 0.7 0.826968
Target:  5'- -cGCUGGAAGcgGCGCUUGcGCGCg- -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGACaUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 90050 0.74 0.606517
Target:  5'- gCUGCCGGAcagccAGcgGCGCCccgcggGCGCCGa -3'
miRNA:   3'- -GACGGUCU-----UUuaCGCGGaca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 90223 0.7 0.835588
Target:  5'- uCUGCCGGcggggcGAcgGCGgCUGcgACGCCGu -3'
miRNA:   3'- -GACGGUCu-----UUuaCGCgGACa-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 90732 0.66 0.951547
Target:  5'- -cGCUGGGcc--GCGCCUGagGCGCUGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 91735 0.67 0.937794
Target:  5'- -cGCCGGGc--UGCGCCccgcGgaggGCGCCGa -3'
miRNA:   3'- gaCGGUCUuuuACGCGGa---Ca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 93355 0.69 0.875582
Target:  5'- -cGCgCAGcgc--GCGCCaGUGCGCCGg -3'
miRNA:   3'- gaCG-GUCuuuuaCGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 93674 0.66 0.951547
Target:  5'- -cGCgGGcgGcgGCGCCggcgGgGCGCCGg -3'
miRNA:   3'- gaCGgUCuuUuaCGCGGa---CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 94642 0.69 0.878541
Target:  5'- -cGCCGGAGAcgGCGUCgcgcacggcgaaGCGCCGc -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGaca---------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 95768 0.66 0.947212
Target:  5'- -cGCCGGGAGccucGCGCgCU--GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUua--CGCG-GAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 98367 0.73 0.680296
Target:  5'- cCUGCUGGcc-GUGUGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUCuuuUACGCGGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 98425 0.7 0.826968
Target:  5'- -gGCCAGAGccugGCGCCggcgGccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGa---Ca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 99560 0.72 0.690742
Target:  5'- -cGCCAGGAAGgcgucguagcucUGgGCCUGcGCGCCc -3'
miRNA:   3'- gaCGGUCUUUU------------ACgCGGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 100808 0.69 0.852229
Target:  5'- --cCCGGAAGggcgcGUGCGCCU--GCGCCGc -3'
miRNA:   3'- gacGGUCUUU-----UACGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 100839 0.7 0.835588
Target:  5'- -gGCCGGGAGcucgGCGaCCUGcGCGUCGa -3'
miRNA:   3'- gaCGGUCUUUua--CGC-GGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 101564 0.71 0.790687
Target:  5'- -cGCC-GAGGAUGCGCUcGgcgcGCGCCGu -3'
miRNA:   3'- gaCGGuCUUUUACGCGGaCa---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 101602 0.74 0.627623
Target:  5'- -cGCCGGcuuc-GCGCCguuUGUGCGCCGg -3'
miRNA:   3'- gaCGGUCuuuuaCGCGG---ACAUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.