miRNA display CGI


Results 121 - 140 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 1956 0.67 0.932707
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 68525 0.67 0.931659
Target:  5'- cCUGCCGGcgccgccgGCGCCcGcGCGCCc -3'
miRNA:   3'- -GACGGUCuuuua---CGCGGaCaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 135605 0.67 0.927365
Target:  5'- gUGCUGGAGAAccUGCGgCUGaagcugGCGCCc -3'
miRNA:   3'- gACGGUCUUUU--ACGCgGACa-----UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 108737 0.67 0.927365
Target:  5'- -gGCCAGcgGcgGCGCCgcgGCGuCCGc -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGC-GGC- -5'
23564 5' -53.2 NC_005261.1 + 86488 0.67 0.927365
Target:  5'- -gGCCGGGccg-GCGCCUGUcuGCGgCa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACA--UGCgGc -5'
23564 5' -53.2 NC_005261.1 + 68742 0.67 0.921768
Target:  5'- -gGCgGGAAGAaGCGCCcGccgggGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGaCa----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 85711 0.67 0.921768
Target:  5'- gCUGCCcgcAGAAGAUGCcgugGCaCUGgcugaGCGCCa -3'
miRNA:   3'- -GACGG---UCUUUUACG----CG-GACa----UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 69520 0.67 0.921768
Target:  5'- gCUGCCGGAGcugGCGCgg--GCGCUGg -3'
miRNA:   3'- -GACGGUCUUuuaCGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 109057 0.67 0.921194
Target:  5'- -cGCCAGGuagcccAGcgGCGCCUcggcgaucaugccGUugGCCa -3'
miRNA:   3'- gaCGGUCU------UUuaCGCGGA-------------CAugCGGc -5'
23564 5' -53.2 NC_005261.1 + 109449 0.68 0.918288
Target:  5'- -cGCCAGAGAGgcaacccccgcuucGCGCgUGcGCGCCc -3'
miRNA:   3'- gaCGGUCUUUUa-------------CGCGgACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 58699 0.68 0.915917
Target:  5'- -cGUCAGGGc--GCGCCgcugagagGUGCGCCa -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGa-------CAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 29859 0.68 0.909813
Target:  5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 55258 0.68 0.909813
Target:  5'- -cGCgAGGAGGucUGCGCCcccugGcGCGCCGg -3'
miRNA:   3'- gaCGgUCUUUU--ACGCGGa----CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 22723 0.68 0.909813
Target:  5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 59377 0.68 0.903457
Target:  5'- -cGCCAGcgcccGCGCCacgGCGCCGa -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 128253 0.68 0.903457
Target:  5'- -aGCCGGAAGcagaGCCUGUAUGCg- -3'
miRNA:   3'- gaCGGUCUUUuacgCGGACAUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 77624 0.68 0.903457
Target:  5'- -aGCCAGAucaugGC-CCUGgccgGCGCCa -3'
miRNA:   3'- gaCGGUCUuuua-CGcGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 33054 0.68 0.903457
Target:  5'- -gGCCAGGAcucgGCGCCgGggacgcgGCGCUGg -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaCa------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 52936 0.68 0.902808
Target:  5'- -cGCCAGGug--GCGCCaGUcaaacucggagcaGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGaCA-------------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 54169 0.68 0.897524
Target:  5'- uUGCCGGGAAGaccaaggggaggagcGCGCaccgGUGCGCCa -3'
miRNA:   3'- gACGGUCUUUUa--------------CGCGga--CAUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.