miRNA display CGI


Results 141 - 160 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 130107 0.68 0.896853
Target:  5'- -cGCCAGcGAcUGCGCCUuggcgagccgccGcGCGCCGu -3'
miRNA:   3'- gaCGGUCuUUuACGCGGA------------CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127705 0.68 0.896853
Target:  5'- -cGCCGGAGGAgcUGCGCgUGgccUGCCu -3'
miRNA:   3'- gaCGGUCUUUU--ACGCGgACau-GCGGc -5'
23564 5' -53.2 NC_005261.1 + 43431 0.68 0.896853
Target:  5'- -cGCCGgcGggGAgcuggcucgGCGCCUGgacguCGCCGg -3'
miRNA:   3'- gaCGGU--CuuUUa--------CGCGGACau---GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 36756 0.68 0.896853
Target:  5'- -gGCCAGcug--GCGCCccUGcACGCCGg -3'
miRNA:   3'- gaCGGUCuuuuaCGCGG--ACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 28765 0.68 0.896853
Target:  5'- -gGCCGGGg---GCGCCUGggccgcgGCGCgGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa------UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 3843 0.68 0.896853
Target:  5'- gCUGgCGGcAGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- -GACgGUCuUUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 118483 0.68 0.896853
Target:  5'- uCUGCCGGu--AUGCGgcgcugcggacCCUG-GCGCCGc -3'
miRNA:   3'- -GACGGUCuuuUACGC-----------GGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 53325 0.68 0.890002
Target:  5'- -gGCCgcAGGu-GUGCGCCUcUGCGCCc -3'
miRNA:   3'- gaCGG--UCUuuUACGCGGAcAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 45410 0.68 0.890002
Target:  5'- gUGCCuGcuGcgGCGCCUGcgccCGCCGc -3'
miRNA:   3'- gACGGuCuuUuaCGCGGACau--GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 12124 0.68 0.890002
Target:  5'- -cGCCAGGAug-GCGCCcgc-CGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 50838 0.68 0.882911
Target:  5'- -cGCCGcGAGcugGCGCCUGUGgcuCGCCc -3'
miRNA:   3'- gaCGGU-CUUuuaCGCGGACAU---GCGGc -5'
23564 5' -53.2 NC_005261.1 + 113649 0.68 0.882911
Target:  5'- -cGaCCAGGA---GCGCCUGaucgaccucUGCGCCGa -3'
miRNA:   3'- gaC-GGUCUUuuaCGCGGAC---------AUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 54879 0.68 0.882911
Target:  5'- -gGCCGGAuGAUGCGUCgGcGCGCgCGu -3'
miRNA:   3'- gaCGGUCUuUUACGCGGaCaUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 43012 0.69 0.875582
Target:  5'- -gGCCAGGGcGUguacaGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGGUCUUuUA-----CGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 93355 0.69 0.875582
Target:  5'- -cGCgCAGcgc--GCGCCaGUGCGCCGg -3'
miRNA:   3'- gaCG-GUCuuuuaCGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 79105 0.69 0.875582
Target:  5'- gCUGCggaggCGGGAGAUGUaCCgGUACGCCa -3'
miRNA:   3'- -GACG-----GUCUUUUACGcGGaCAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 60383 0.69 0.868021
Target:  5'- -cGUUGGcGAGGUGCGCCUccaugGCGCCGg -3'
miRNA:   3'- gaCGGUC-UUUUACGCGGAca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 102825 0.69 0.860235
Target:  5'- -cGCCGGuc--UGCGCCUc-GCGCCGc -3'
miRNA:   3'- gaCGGUCuuuuACGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 100808 0.69 0.852229
Target:  5'- --cCCGGAAGggcgcGUGCGCCU--GCGCCGc -3'
miRNA:   3'- gacGGUCUUU-----UACGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 101659 0.69 0.852229
Target:  5'- gUGCuCAGcAucUGCGCCUcGUAgGCCGa -3'
miRNA:   3'- gACG-GUCuUuuACGCGGA-CAUgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.