miRNA display CGI


Results 161 - 180 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 21261 0.69 0.844011
Target:  5'- gUGCCGcaacgagcacGAGGAcG-GCCUGUACGCCa -3'
miRNA:   3'- gACGGU----------CUUUUaCgCGGACAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 110983 0.7 0.835588
Target:  5'- -cGCCGccuucGUGCGCCUGgggACGCUGc -3'
miRNA:   3'- gaCGGUcuuu-UACGCGGACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 100839 0.7 0.835588
Target:  5'- -gGCCGGGAGcucgGCGaCCUGcGCGUCGa -3'
miRNA:   3'- gaCGGUCUUUua--CGC-GGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 125121 0.7 0.826968
Target:  5'- -cGCuCGGguGGUGCGUCUGUGuccauagcauCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUACGCGGACAU----------GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 59068 0.7 0.826968
Target:  5'- -gGCCgcGGAGAGcGCGCgCggGUGCGCCGc -3'
miRNA:   3'- gaCGG--UCUUUUaCGCG-Ga-CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 9091 0.7 0.82522
Target:  5'- uCUGCCAGuguccucacguGGUGUGCCgagagGgcCGCCGg -3'
miRNA:   3'- -GACGGUCuu---------UUACGCGGa----CauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60168 0.7 0.818158
Target:  5'- gCUGCCGuGGAAGcGCGUCU--GCGCCGc -3'
miRNA:   3'- -GACGGU-CUUUUaCGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 62563 0.7 0.809169
Target:  5'- -cGCCAGc--AUGCGCCccgGCGCCa -3'
miRNA:   3'- gaCGGUCuuuUACGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 74519 0.7 0.800009
Target:  5'- -cGCCGGGGccaugGCGCUUGgGCGCCu -3'
miRNA:   3'- gaCGGUCUUuua--CGCGGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 101564 0.71 0.790687
Target:  5'- -cGCC-GAGGAUGCGCUcGgcgcGCGCCGu -3'
miRNA:   3'- gaCGGuCUUUUACGCGGaCa---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 37373 0.71 0.790687
Target:  5'- -cGCCcGAGGcgGCGCUgugGUACGCgGa -3'
miRNA:   3'- gaCGGuCUUUuaCGCGGa--CAUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 3621 0.71 0.790687
Target:  5'- gCUGCCcGGAGcacGCGCUccggGUGCGCCGc -3'
miRNA:   3'- -GACGGuCUUUua-CGCGGa---CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 31423 0.71 0.781213
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 132618 0.71 0.761848
Target:  5'- -cGCCAGggG--GCGCUg--GCGCCGa -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 11099 0.71 0.761848
Target:  5'- -gGCgGGAcgcgacgggacgAGAUGCGCCggcagcGUGCGCCGc -3'
miRNA:   3'- gaCGgUCU------------UUUACGCGGa-----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 69476 0.72 0.731906
Target:  5'- -gGCCAcauccgcgcGAugcuGGUGCaCCUGUACGCCGg -3'
miRNA:   3'- gaCGGU---------CUu---UUACGcGGACAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 99560 0.72 0.690742
Target:  5'- -cGCCAGGAAGgcgucguagcucUGgGCCUGcGCGCCc -3'
miRNA:   3'- gaCGGUCUUUU------------ACgCGGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 73531 0.74 0.617064
Target:  5'- -cGUgGGGAAcaucGUGCGCCaGUACGCCa -3'
miRNA:   3'- gaCGgUCUUU----UACGCGGaCAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 90050 0.74 0.606517
Target:  5'- gCUGCCGGAcagccAGcgGCGCCccgcggGCGCCGa -3'
miRNA:   3'- -GACGGUCU-----UUuaCGCGGaca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 131421 0.74 0.585491
Target:  5'- gCUGCCGGcAGcgGCGCCg--GCGCCc -3'
miRNA:   3'- -GACGGUCuUUuaCGCGGacaUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.