miRNA display CGI


Results 81 - 100 of 183 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 53325 0.68 0.890002
Target:  5'- -gGCCgcAGGu-GUGCGCCUcUGCGCCc -3'
miRNA:   3'- gaCGG--UCUuuUACGCGGAcAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 54879 0.68 0.882911
Target:  5'- -gGCCGGAuGAUGCGUCgGcGCGCgCGu -3'
miRNA:   3'- gaCGGUCUuUUACGCGGaCaUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 79105 0.69 0.875582
Target:  5'- gCUGCggaggCGGGAGAUGUaCCgGUACGCCa -3'
miRNA:   3'- -GACG-----GUCUUUUACGcGGaCAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 102825 0.69 0.860235
Target:  5'- -cGCCGGuc--UGCGCCUc-GCGCCGc -3'
miRNA:   3'- gaCGGUCuuuuACGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 100808 0.69 0.852229
Target:  5'- --cCCGGAAGggcgcGUGCGCCU--GCGCCGc -3'
miRNA:   3'- gacGGUCUUU-----UACGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 125121 0.7 0.826968
Target:  5'- -cGCuCGGguGGUGCGUCUGUGuccauagcauCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUACGCGGACAU----------GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 70100 0.67 0.932707
Target:  5'- -cGCCGgcGAGAAgcucgGCGCCUcGUGC-CCGg -3'
miRNA:   3'- gaCGGU--CUUUUa----CGCGGA-CAUGcGGC- -5'
23564 5' -53.2 NC_005261.1 + 86586 0.67 0.937794
Target:  5'- -aGCCGGcgGcgGCGCCguccuugGCGUCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGaca----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 95768 0.66 0.947212
Target:  5'- -cGCCGGGAGccucGCGCgCU--GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUua--CGCG-GAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 68525 0.67 0.931659
Target:  5'- cCUGCCGGcgccgccgGCGCCcGcGCGCCc -3'
miRNA:   3'- -GACGGUCuuuua---CGCGGaCaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 86488 0.67 0.927365
Target:  5'- -gGCCGGGccg-GCGCCUGUcuGCGgCa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACA--UGCgGc -5'
23564 5' -53.2 NC_005261.1 + 109057 0.67 0.921194
Target:  5'- -cGCCAGGuagcccAGcgGCGCCUcggcgaucaugccGUugGCCa -3'
miRNA:   3'- gaCGGUCU------UUuaCGCGGA-------------CAugCGGc -5'
23564 5' -53.2 NC_005261.1 + 68866 0.77 0.464187
Target:  5'- uCUGCCGcGGcuGUGCGCCgucGUGCGCUGc -3'
miRNA:   3'- -GACGGU-CUuuUACGCGGa--CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127630 0.67 0.942629
Target:  5'- -gGCCGGAcgcGAcgGCGgCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCU---UUuaCGCgGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 98425 0.7 0.826968
Target:  5'- -gGCCAGAGccugGCGCCggcgGccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGa---Ca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 89949 0.7 0.826968
Target:  5'- -cGCUGGAAGcgGCGCUUGcGCGCg- -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGACaUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 115617 0.71 0.761848
Target:  5'- -gGCgGGAcgcgacgggacgAGAUGCGCCggcagcGUGCGCCGc -3'
miRNA:   3'- gaCGgUCU------------UUUACGCGGa-----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 41918 0.67 0.927365
Target:  5'- -gGCCAGucAggGCGUCagGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGa-CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 51643 0.67 0.927365
Target:  5'- -cGCCAaGGAcgGCGCCgc--CGCCGg -3'
miRNA:   3'- gaCGGUcUUUuaCGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 108248 0.67 0.932707
Target:  5'- gCUGCCGGAcgcgccGGcgGCGCacc-GCGCCGc -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGgacaUGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.