miRNA display CGI


Results 121 - 140 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 33686 0.68 0.915917
Target:  5'- cCUGgCGGAcgccAAGcUGCGCCUGgugGCgGCCGc -3'
miRNA:   3'- -GACgGUCU----UUU-ACGCGGACa--UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 41883 0.67 0.927365
Target:  5'- -gGCCAGucAggGCGUCagGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGa-CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 41918 0.67 0.927365
Target:  5'- -gGCCAGucAggGCGUCagGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGa-CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 51643 0.67 0.927365
Target:  5'- -cGCCAaGGAcgGCGCCgc--CGCCGg -3'
miRNA:   3'- gaCGGUcUUUuaCGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 106473 0.67 0.932707
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 68119 0.66 0.959485
Target:  5'- uUGCCGGGcacgagGCGCCgagcuucuCGCCGg -3'
miRNA:   3'- gACGGUCUuuua--CGCGGacau----GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 23907 0.66 0.963098
Target:  5'- -aGCCAGuccaccuUGCGCCgg-ACuGCCGg -3'
miRNA:   3'- gaCGGUCuuuu---ACGCGGacaUG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 136306 0.66 0.963098
Target:  5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 89949 0.7 0.826968
Target:  5'- -cGCUGGAAGcgGCGCUUGcGCGCg- -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGACaUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 98425 0.7 0.826968
Target:  5'- -gGCCAGAGccugGCGCCggcgGccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGa---Ca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 108360 0.68 0.896853
Target:  5'- gCUGgCGGcAGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- -GACgGUCuUUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 29868 0.68 0.896853
Target:  5'- -cGCgGGcaGGGAUGCGCCUGcgACGgCGg -3'
miRNA:   3'- gaCGgUC--UUUUACGCGGACa-UGCgGC- -5'
23564 5' -53.2 NC_005261.1 + 32111 0.68 0.896853
Target:  5'- uUGCCGGcgcgcgcGCGCCggcgACGCCGg -3'
miRNA:   3'- gACGGUCuuuua--CGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60570 0.68 0.896853
Target:  5'- -cGCCc-----UGCGCCUGcagGCGCCGg -3'
miRNA:   3'- gaCGGucuuuuACGCGGACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 133282 0.68 0.896853
Target:  5'- -gGCCGGGg---GCGCCUGggccgcgGCGCgGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa------UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 19917 0.68 0.903457
Target:  5'- -gGCCAGcagcgcggugcgGAAGUGCGCCccgGUGC-CCGc -3'
miRNA:   3'- gaCGGUC------------UUUUACGCGGa--CAUGcGGC- -5'
23564 5' -53.2 NC_005261.1 + 137572 0.68 0.903457
Target:  5'- -gGCCAGGAcucgGCGCCgGggacgcgGCGCUGg -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaCa------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 66819 0.68 0.903457
Target:  5'- -gGCCGGGccccGCGCCgg-ACGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 20902 0.68 0.909813
Target:  5'- -gGCgCGGGcaaGGAUGCGCUUGcugcccGCGCCGg -3'
miRNA:   3'- gaCG-GUCU---UUUACGCGGACa-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127240 0.68 0.909813
Target:  5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.