miRNA display CGI


Results 141 - 160 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 31294 0.66 0.959485
Target:  5'- -gGCCG--AGGUGCGCgUGU-CGCUGg -3'
miRNA:   3'- gaCGGUcuUUUACGCGgACAuGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 65288 0.66 0.959485
Target:  5'- -aGCCGGugccgGCGCCg--GCGCUGc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 68119 0.66 0.959485
Target:  5'- uUGCCGGGcacgagGCGCCgagcuucuCGCCGg -3'
miRNA:   3'- gACGGUCUuuua--CGCGGacau----GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 23907 0.66 0.963098
Target:  5'- -aGCCAGuccaccuUGCGCCgg-ACuGCCGg -3'
miRNA:   3'- gaCGGUCuuuu---ACGCGGacaUG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 43962 0.67 0.942629
Target:  5'- -cGCCaAGAGccucGcgGCGCCgcccUGCGCCGu -3'
miRNA:   3'- gaCGG-UCUU----UuaCGCGGac--AUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 6741 0.67 0.942629
Target:  5'- gUGCCGGAAGAagGCGUCgacgGcGCGCUc -3'
miRNA:   3'- gACGGUCUUUUa-CGCGGa---CaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 66819 0.68 0.903457
Target:  5'- -gGCCGGGccccGCGCCgg-ACGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 20902 0.68 0.909813
Target:  5'- -gGCgCGGGcaaGGAUGCGCUUGcugcccGCGCCGg -3'
miRNA:   3'- gaCG-GUCU---UUUACGCGGACa-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127240 0.68 0.909813
Target:  5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 44190 0.68 0.909813
Target:  5'- -cGCUGGggGGgcGCGCCgGgcCGCCGa -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 80881 0.68 0.909813
Target:  5'- -cGCgGGGAGGUcGUGCCgGUgaacgGCGCCGg -3'
miRNA:   3'- gaCGgUCUUUUA-CGCGGaCA-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 134376 0.68 0.909813
Target:  5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 34024 0.68 0.914717
Target:  5'- -cGCCGcgcgcgaGCGCCUGgACGCCGu -3'
miRNA:   3'- gaCGGUcuuuua-CGCGGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 76709 0.68 0.915917
Target:  5'- uUGCCGGAGAAggcccGgGCCU---CGCCGg -3'
miRNA:   3'- gACGGUCUUUUa----CgCGGAcauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 33686 0.68 0.915917
Target:  5'- cCUGgCGGAcgccAAGcUGCGCCUGgugGCgGCCGc -3'
miRNA:   3'- -GACgGUCU----UUU-ACGCGGACa--UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 84669 0.67 0.921768
Target:  5'- -gGCCGcu-AGUGCGCCUGg--GCCGc -3'
miRNA:   3'- gaCGGUcuuUUACGCGGACaugCGGC- -5'
23564 5' -53.2 NC_005261.1 + 41883 0.67 0.927365
Target:  5'- -gGCCAGucAggGCGUCagGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGa-CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 41918 0.67 0.927365
Target:  5'- -gGCCAGucAggGCGUCagGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGa-CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 106473 0.67 0.932707
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 108248 0.67 0.932707
Target:  5'- gCUGCCGGAcgcgccGGcgGCGCacc-GCGCCGc -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGgacaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.