miRNA display CGI


Results 1 - 20 of 183 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 138113 0.67 0.937794
Target:  5'- --aCCAGggGcgGCGCCg--GCGCgGg -3'
miRNA:   3'- gacGGUCuuUuaCGCGGacaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 137572 0.68 0.903457
Target:  5'- -gGCCAGGAcucgGCGCCgGggacgcgGCGCUGg -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaCa------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 136306 0.66 0.963098
Target:  5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 135940 0.71 0.781213
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 135605 0.67 0.927365
Target:  5'- gUGCUGGAGAAccUGCGgCUGaagcugGCGCCc -3'
miRNA:   3'- gACGGUCUUUU--ACGCgGACa-----UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 135527 0.67 0.941682
Target:  5'- -gGCCAGggGcccgGCGCCggccaaaagccgGcGCGCCGc -3'
miRNA:   3'- gaCGGUCuuUua--CGCGGa-----------CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 134483 0.77 0.426654
Target:  5'- -cGCUAGAGGcgGCGCg-GUGCGCCGc -3'
miRNA:   3'- gaCGGUCUUUuaCGCGgaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 134376 0.68 0.909813
Target:  5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 133633 0.67 0.937794
Target:  5'- -cGCCgAGggGAgcccugGCGCCgGgggGCGCCc -3'
miRNA:   3'- gaCGG-UCuuUUa-----CGCGGaCa--UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 133282 0.68 0.896853
Target:  5'- -gGCCGGGg---GCGCCUGggccgcgGCGCgGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa------UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 132618 0.71 0.761848
Target:  5'- -cGCCAGggG--GCGCUg--GCGCCGa -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 131421 0.74 0.585491
Target:  5'- gCUGCCGGcAGcgGCGCCg--GCGCCc -3'
miRNA:   3'- -GACGGUCuUUuaCGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 130107 0.68 0.896853
Target:  5'- -cGCCAGcGAcUGCGCCUuggcgagccgccGcGCGCCGu -3'
miRNA:   3'- gaCGGUCuUUuACGCGGA------------CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 128253 0.68 0.903457
Target:  5'- -aGCCGGAAGcagaGCCUGUAUGCg- -3'
miRNA:   3'- gaCGGUCUUUuacgCGGACAUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 127866 0.66 0.951547
Target:  5'- -cGCCAGGgcacgagcggGAGUcGCGCCg--GCGCCc -3'
miRNA:   3'- gaCGGUCU----------UUUA-CGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 127705 0.68 0.896853
Target:  5'- -cGCCGGAGGAgcUGCGCgUGgccUGCCu -3'
miRNA:   3'- gaCGGUCUUUU--ACGCGgACau-GCGGc -5'
23564 5' -53.2 NC_005261.1 + 127630 0.67 0.942629
Target:  5'- -gGCCGGAcgcGAcgGCGgCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCU---UUuaCGCgGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127240 0.68 0.909813
Target:  5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 127173 0.66 0.951547
Target:  5'- -cGCUGGcg---GCGCCUGggcgGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 126640 1.1 0.003864
Target:  5'- uCUGCCAGAAAAUGCGCCUGUACGCCGg -3'
miRNA:   3'- -GACGGUCUUUUACGCGGACAUGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.