miRNA display CGI


Results 81 - 100 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 119043 0.66 0.883065
Target:  5'- gGGCGAAgGCGAcUGCGCCCgGCaGCUg- -3'
miRNA:   3'- -UCGCUU-UGCUuGUGCGGGaCG-CGGac -5'
23565 3' -56.1 NC_005261.1 + 104367 0.66 0.883065
Target:  5'- aGGCGGgcGGCGGggggcccucccgGCcCGCCCaGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGCU------------UGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 90228 0.66 0.883065
Target:  5'- cGGCGggGCGAcggcggcuGCgACGCCgUGUucGcCCUGg -3'
miRNA:   3'- -UCGCuuUGCU--------UG-UGCGGgACG--C-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 22034 0.66 0.868513
Target:  5'- gAGCGcuucuGCGGcgACGCGCCCagcgGCGUCg- -3'
miRNA:   3'- -UCGCuu---UGCU--UGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 16376 0.66 0.890003
Target:  5'- cGGCGGGagccGCGGGCugcugGCGCCggUGCGCCg- -3'
miRNA:   3'- -UCGCUU----UGCUUG-----UGCGGg-ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 70302 0.66 0.887255
Target:  5'- cGGCGggGgGGACAaugacgcaaaaggGCCCcggGCGCCg- -3'
miRNA:   3'- -UCGCuuUgCUUGUg------------CGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 77144 0.66 0.890003
Target:  5'- cGGCGGc-CGAGC-UGCCCgugaGCGCCg- -3'
miRNA:   3'- -UCGCUuuGCUUGuGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100876 0.66 0.883065
Target:  5'- gGGCG--GCGAGCAcCGCCC-GCggauaaagauGCCUGc -3'
miRNA:   3'- -UCGCuuUGCUUGU-GCGGGaCG----------CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 104014 0.66 0.883065
Target:  5'- cGCGucuGCGucCGCGUCCgacGCGCCg- -3'
miRNA:   3'- uCGCuu-UGCuuGUGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 106345 0.66 0.8759
Target:  5'- cGCGuAAGCGGccucgGCGCGCgCgaagGCGCCg- -3'
miRNA:   3'- uCGC-UUUGCU-----UGUGCGgGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 66240 0.66 0.892714
Target:  5'- aGGCcaGggGCGAcgcugcgcaccugccGCGCGCUCcGCGCCc- -3'
miRNA:   3'- -UCG--CuuUGCU---------------UGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 18289 0.66 0.890003
Target:  5'- cGCGGuacgucguGACGGuCACGaCCUUGCGCUg- -3'
miRNA:   3'- uCGCU--------UUGCUuGUGC-GGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 56462 0.66 0.883065
Target:  5'- cGCGAGcuCGucCugGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUUu-GCuuGugCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 126386 0.66 0.860909
Target:  5'- cGCGcucGCGAacGCGCGCCCgcgGgGCCc- -3'
miRNA:   3'- uCGCuu-UGCU--UGUGCGGGa--CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 79520 0.66 0.882359
Target:  5'- cGGCGGuggcgcaccucucAGCG-GCGCGCCCUGacgGCCc- -3'
miRNA:   3'- -UCGCU-------------UUGCuUGUGCGGGACg--CGGac -5'
23565 3' -56.1 NC_005261.1 + 43647 0.66 0.883065
Target:  5'- gGGCGGA--GGGCGCGUUCgGCGCCc- -3'
miRNA:   3'- -UCGCUUugCUUGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 32086 0.66 0.883065
Target:  5'- cGGCGAGGCGGcacCAUGUCCgGCGUUg- -3'
miRNA:   3'- -UCGCUUUGCUu--GUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 91730 0.66 0.8759
Target:  5'- cGCGAcgcCGGGCuGCGCCCcgcggaggGCGCCg- -3'
miRNA:   3'- uCGCUuu-GCUUG-UGCGGGa-------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36653 0.66 0.868513
Target:  5'- cGCGGAggccACGGcGCGCGCCgaGCGCa-- -3'
miRNA:   3'- uCGCUU----UGCU-UGUGCGGgaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 19407 0.66 0.892714
Target:  5'- gAGCGGcagugccgcgcccagGGCGcAgACGCCCacgUGCGCCa- -3'
miRNA:   3'- -UCGCU---------------UUGCuUgUGCGGG---ACGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.