miRNA display CGI


Results 101 - 120 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 77135 0.66 0.8759
Target:  5'- cGCGAcaaGugGGACAcCGUCUcGCGCCg- -3'
miRNA:   3'- uCGCU---UugCUUGU-GCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 124917 0.66 0.890003
Target:  5'- cGCGGGaagccGCGGaggcuccgccGCGCGCgCUGUGCCg- -3'
miRNA:   3'- uCGCUU-----UGCU----------UGUGCGgGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133658 0.66 0.890003
Target:  5'- gAGCGcuGCGuGCuCGCCUccgGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCuUGuGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100021 0.66 0.890003
Target:  5'- gAGCGAggUGuugagcagcAGCACGCCgCggcGCGCCc- -3'
miRNA:   3'- -UCGCUuuGC---------UUGUGCGG-Ga--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 77144 0.66 0.890003
Target:  5'- cGGCGGc-CGAGC-UGCCCgugaGCGCCg- -3'
miRNA:   3'- -UCGCUuuGCUUGuGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 70302 0.66 0.887255
Target:  5'- cGGCGggGgGGACAaugacgcaaaaggGCCCcggGCGCCg- -3'
miRNA:   3'- -UCGCuuUgCUUGUg------------CGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 109008 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133734 0.66 0.890003
Target:  5'- gGGCGgcGCGGACaACGCCacgcGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCUUG-UGCGGga--CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 60347 0.66 0.890003
Target:  5'- cGGCGccGCGGccGCGCGCCaggcaGUGCUUGg -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCGGga---CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 57543 0.66 0.8759
Target:  5'- cGGCGc-ACGGgcacacgucgcACGCGCCCggcuccgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU-----------UGUGCGGGa------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100809 0.66 0.890003
Target:  5'- -cCGGAA-GGGCGCGUgcgCCUGCGCCg- -3'
miRNA:   3'- ucGCUUUgCUUGUGCG---GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 69340 0.66 0.88932
Target:  5'- cAGCGAcggagacGGCGAcgACGCGgCCgcgcGCGCgCUGg -3'
miRNA:   3'- -UCGCU-------UUGCU--UGUGCgGGa---CGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 13048 0.66 0.890003
Target:  5'- cGCGggGcCGcGCGCGCCCcugccggGCGCg-- -3'
miRNA:   3'- uCGCuuU-GCuUGUGCGGGa------CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 41208 0.67 0.83686
Target:  5'- gGGCGGc-CGGGCGCGCCCgacgGCccGCCc- -3'
miRNA:   3'- -UCGCUuuGCUUGUGCGGGa---CG--CGGac -5'
23565 3' -56.1 NC_005261.1 + 9512 0.67 0.83686
Target:  5'- cGGCGG-GCGGGCgGgGCCCgggcGCGCCUc -3'
miRNA:   3'- -UCGCUuUGCUUG-UgCGGGa---CGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 136630 0.67 0.83686
Target:  5'- gGGCGAGGCGGcCA-GCCaCcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUgCGG-GaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 13903 0.67 0.83686
Target:  5'- aGGCGcugcucuuuuuGGCGGACGCGCUgCUGCGCgUa -3'
miRNA:   3'- -UCGCu----------UUGCUUGUGCGG-GACGCGgAc -5'
23565 3' -56.1 NC_005261.1 + 47125 0.67 0.840169
Target:  5'- cGCGAGACGGcgucgucgugcaugaGCACGUcgaCCagGCGCCg- -3'
miRNA:   3'- uCGCUUUGCU---------------UGUGCG---GGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 50810 0.67 0.83686
Target:  5'- cGGCGccuuCGccGGCGCGCCCgucgacgGCGCCg- -3'
miRNA:   3'- -UCGCuuu-GC--UUGUGCGGGa------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 90638 0.67 0.828454
Target:  5'- gGGCGGcucccucgcGCGcGCGCgGCUCUGCGCCa- -3'
miRNA:   3'- -UCGCUu--------UGCuUGUG-CGGGACGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.