miRNA display CGI


Results 121 - 140 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 121619 0.67 0.853095
Target:  5'- cGCGGAgcGCGggUAUaCCUucgGCGCCUGc -3'
miRNA:   3'- uCGCUU--UGCuuGUGcGGGa--CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 33511 0.67 0.853095
Target:  5'- cGCGgcACG-ACGCGCCCUcgGCCg- -3'
miRNA:   3'- uCGCuuUGCuUGUGCGGGAcgCGGac -5'
23565 3' -56.1 NC_005261.1 + 63982 0.67 0.844263
Target:  5'- cGCGAAugGGacguacucgGCGCGCCCgGCuauuauaGCCUc -3'
miRNA:   3'- uCGCUUugCU---------UGUGCGGGaCG-------CGGAc -5'
23565 3' -56.1 NC_005261.1 + 47125 0.67 0.840169
Target:  5'- cGCGAGACGGcgucgucgugcaugaGCACGUcgaCCagGCGCCg- -3'
miRNA:   3'- uCGCUUUGCU---------------UGUGCG---GGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 29856 0.67 0.819866
Target:  5'- cGCGGGcGCGGACGCggGCagggaUGCGCCUGc -3'
miRNA:   3'- uCGCUU-UGCUUGUG--CGgg---ACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 62646 0.67 0.819866
Target:  5'- cGGCGcgcGCGAGCGCcgcgccgccGCCCaGCGCCc- -3'
miRNA:   3'- -UCGCuu-UGCUUGUG---------CGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 29420 0.67 0.828454
Target:  5'- aGGCGggGCuca-GCGCCCUGgCGCa-- -3'
miRNA:   3'- -UCGCuuUGcuugUGCGGGAC-GCGgac -5'
23565 3' -56.1 NC_005261.1 + 69987 0.67 0.828454
Target:  5'- aGGCaGuccACGAACACGCCCc-CGCCg- -3'
miRNA:   3'- -UCG-Cuu-UGCUUGUGCGGGacGCGGac -5'
23565 3' -56.1 NC_005261.1 + 15662 0.67 0.828454
Target:  5'- cGGCGGAGCuGcGCAgCGCCUUGCGUg-- -3'
miRNA:   3'- -UCGCUUUG-CuUGU-GCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 90638 0.67 0.828454
Target:  5'- gGGCGGcucccucgcGCGcGCGCgGCUCUGCGCCa- -3'
miRNA:   3'- -UCGCUu--------UGCuUGUG-CGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 138136 0.67 0.819866
Target:  5'- cGGCGggGCccggGGGCGCGCCCcGCaCCc- -3'
miRNA:   3'- -UCGCuuUG----CUUGUGCGGGaCGcGGac -5'
23565 3' -56.1 NC_005261.1 + 109092 0.67 0.819866
Target:  5'- gGGCGGguccGGCGGG-GCGCCCcccgGCGCCa- -3'
miRNA:   3'- -UCGCU----UUGCUUgUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 82296 0.67 0.828454
Target:  5'- gAGCcAAACGGcuGCGCGCCggcggcggCUGCGgCUGg -3'
miRNA:   3'- -UCGcUUUGCU--UGUGCGG--------GACGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 36101 0.67 0.808443
Target:  5'- cGCGuGGugGGACGCGuucucccuggcggcCCCUGCGCUg- -3'
miRNA:   3'- uCGC-UUugCUUGUGC--------------GGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 35267 0.67 0.83686
Target:  5'- cGGCGGAGCccGCgGCGCCCgcgGcCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuUG-UGCGGGa--C-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 136630 0.67 0.83686
Target:  5'- gGGCGAGGCGGcCA-GCCaCcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUgCGG-GaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 9512 0.67 0.83686
Target:  5'- cGGCGG-GCGGGCgGgGCCCgggcGCGCCUc -3'
miRNA:   3'- -UCGCUuUGCUUG-UgCGGGa---CGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 41208 0.67 0.83686
Target:  5'- gGGCGGc-CGGGCGCGCCCgacgGCccGCCc- -3'
miRNA:   3'- -UCGCUuuGCUUGUGCGGGa---CG--CGGac -5'
23565 3' -56.1 NC_005261.1 + 50810 0.67 0.83686
Target:  5'- cGGCGccuuCGccGGCGCGCCCgucgacgGCGCCg- -3'
miRNA:   3'- -UCGCuuu-GC--UUGUGCGGGa------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36500 0.67 0.819866
Target:  5'- gAGCGAGgcccugaucGCGGGCGCGCUg-GCGCagCUGg -3'
miRNA:   3'- -UCGCUU---------UGCUUGUGCGGgaCGCG--GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.