Results 81 - 100 of 528 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23565 | 3' | -56.1 | NC_005261.1 | + | 52679 | 0.72 | 0.531754 |
Target: 5'- gAGCGGGcccugcucGCGGGCGCGCCgCUGCcgGCCg- -3' miRNA: 3'- -UCGCUU--------UGCUUGUGCGG-GACG--CGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 54779 | 0.72 | 0.541772 |
Target: 5'- gGGCGAcagGACG-GCGCGCCCcGcCGCCUc -3' miRNA: 3'- -UCGCU---UUGCuUGUGCGGGaC-GCGGAc -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 12145 | 0.72 | 0.555898 |
Target: 5'- cGCGaAGAUGGGCGCGCCCgccgaggccggcggGCGgCUGg -3' miRNA: 3'- uCGC-UUUGCUUGUGCGGGa-------------CGCgGAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 13970 | 0.72 | 0.582398 |
Target: 5'- gGGCGc-GCGGGCgGCGCCgCgcgGCGCCUGc -3' miRNA: 3'- -UCGCuuUGCUUG-UGCGG-Ga--CGCGGAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 62713 | 0.72 | 0.582398 |
Target: 5'- cAGCGcgGCGAcCACGgCgUGCGCCUc -3' miRNA: 3'- -UCGCuuUGCUuGUGCgGgACGCGGAc -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 98356 | 0.72 | 0.57217 |
Target: 5'- cGCGcgcGCGGccuGCugGCCgUGUGCCUGg -3' miRNA: 3'- uCGCuu-UGCU---UGugCGGgACGCGGAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 133103 | 0.72 | 0.561985 |
Target: 5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3' miRNA: 3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 82158 | 0.72 | 0.561985 |
Target: 5'- uAGCG-AGCGGACugcuCGCCCaggGCGCCc- -3' miRNA: 3'- -UCGCuUUGCUUGu---GCGGGa--CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 83450 | 0.72 | 0.55185 |
Target: 5'- cGGCGggGCGcGC-CGUCCUGuCGCCc- -3' miRNA: 3'- -UCGCuuUGCuUGuGCGGGAC-GCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 64509 | 0.72 | 0.541772 |
Target: 5'- cGCGcAAGCGcGCACGCcgaccgcgguCCUGCGCCa- -3' miRNA: 3'- uCGC-UUUGCuUGUGCG----------GGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 55647 | 0.72 | 0.531754 |
Target: 5'- cAGCGcAACGAGgACGCgCUGCGCgaGc -3' miRNA: 3'- -UCGCuUUGCUUgUGCGgGACGCGgaC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 133396 | 0.72 | 0.531754 |
Target: 5'- uGCGgcGCGGACGcCGCcgCCUGCGCCc- -3' miRNA: 3'- uCGCuuUGCUUGU-GCG--GGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 80535 | 0.72 | 0.531754 |
Target: 5'- uGGaCGAGGCccuGCugGCCCUGUGCCc- -3' miRNA: 3'- -UC-GCUUUGcu-UGugCGGGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 53259 | 0.72 | 0.531754 |
Target: 5'- cGGCGcaucGCGGACGCGCCC-GaCGCCUc -3' miRNA: 3'- -UCGCuu--UGCUUGUGCGGGaC-GCGGAc -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 34038 | 0.72 | 0.560969 |
Target: 5'- cGCGgcGCGcGCGCuGCCCUGCcugcacgccuucuGCCUGg -3' miRNA: 3'- uCGCuuUGCuUGUG-CGGGACG-------------CGGAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 84967 | 0.72 | 0.55185 |
Target: 5'- aGGCGu--CGGGCGCGUCCgcgaUGCGCCg- -3' miRNA: 3'- -UCGCuuuGCUUGUGCGGG----ACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 28879 | 0.72 | 0.531754 |
Target: 5'- uGCGgcGCGGACGcCGCcgCCUGCGCCc- -3' miRNA: 3'- uCGCuuUGCUUGU-GCG--GGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 74945 | 0.72 | 0.531754 |
Target: 5'- uGCGgcGCGGGCGCGCUCgGCGCgCUc -3' miRNA: 3'- uCGCuuUGCUUGUGCGGGaCGCG-GAc -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 97016 | 0.72 | 0.561985 |
Target: 5'- gGGCGGGccguCGGGCGCGCCCgGcCGCCc- -3' miRNA: 3'- -UCGCUUu---GCUUGUGCGGGaC-GCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 122855 | 0.72 | 0.582398 |
Target: 5'- cGGCGGcgcCGAGgGCGCCgaGCGCCg- -3' miRNA: 3'- -UCGCUuu-GCUUgUGCGGgaCGCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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