miRNA display CGI


Results 81 - 100 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 54779 0.72 0.541772
Target:  5'- gGGCGAcagGACG-GCGCGCCCcGcCGCCUc -3'
miRNA:   3'- -UCGCU---UUGCuUGUGCGGGaC-GCGGAc -5'
23565 3' -56.1 NC_005261.1 + 64509 0.72 0.541772
Target:  5'- cGCGcAAGCGcGCACGCcgaccgcgguCCUGCGCCa- -3'
miRNA:   3'- uCGC-UUUGCuUGUGCG----------GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 83450 0.72 0.55185
Target:  5'- cGGCGggGCGcGC-CGUCCUGuCGCCc- -3'
miRNA:   3'- -UCGCuuUGCuUGuGCGGGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 84967 0.72 0.55185
Target:  5'- aGGCGu--CGGGCGCGUCCgcgaUGCGCCg- -3'
miRNA:   3'- -UCGCuuuGCUUGUGCGGG----ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 12145 0.72 0.555898
Target:  5'- cGCGaAGAUGGGCGCGCCCgccgaggccggcggGCGgCUGg -3'
miRNA:   3'- uCGC-UUUGCUUGUGCGGGa-------------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 34038 0.72 0.560969
Target:  5'- cGCGgcGCGcGCGCuGCCCUGCcugcacgccuucuGCCUGg -3'
miRNA:   3'- uCGCuuUGCuUGUG-CGGGACG-------------CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 28586 0.72 0.561985
Target:  5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 97016 0.72 0.561985
Target:  5'- gGGCGGGccguCGGGCGCGCCCgGcCGCCc- -3'
miRNA:   3'- -UCGCUUu---GCUUGUGCGGGaC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 82158 0.72 0.561985
Target:  5'- uAGCG-AGCGGACugcuCGCCCaggGCGCCc- -3'
miRNA:   3'- -UCGCuUUGCUUGu---GCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133103 0.72 0.561985
Target:  5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 56369 0.72 0.565036
Target:  5'- cGGCGAGGCgcacgucucccagGAGCucgcgggggcccuggGCGCCCUGCGCUUc -3'
miRNA:   3'- -UCGCUUUG-------------CUUG---------------UGCGGGACGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 120620 0.72 0.571149
Target:  5'- cGUGggGCuccugcuGGugGCgGCCCUGUGCCUGc -3'
miRNA:   3'- uCGCuuUG-------CUugUG-CGGGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 98356 0.72 0.57217
Target:  5'- cGCGcgcGCGGccuGCugGCCgUGUGCCUGg -3'
miRNA:   3'- uCGCuu-UGCU---UGugCGGgACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 116642 0.72 0.57217
Target:  5'- gGGCGAGGCccGCGCGCCC-GcCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuUGUGCGGGaC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 51522 0.72 0.57217
Target:  5'- cGGCGAAGCuGGACGCGCUggGCGCgUa -3'
miRNA:   3'- -UCGCUUUG-CUUGUGCGGgaCGCGgAc -5'
23565 3' -56.1 NC_005261.1 + 93904 0.72 0.581373
Target:  5'- cAGCGAcuGCGGGCgcgGCGCCCgcgggcuUGCGCCg- -3'
miRNA:   3'- -UCGCUu-UGCUUG---UGCGGG-------ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 62713 0.72 0.582398
Target:  5'- cAGCGcgGCGAcCACGgCgUGCGCCUc -3'
miRNA:   3'- -UCGCuuUGCUuGUGCgGgACGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 13970 0.72 0.582398
Target:  5'- gGGCGc-GCGGGCgGCGCCgCgcgGCGCCUGc -3'
miRNA:   3'- -UCGCuuUGCUUG-UGCGG-Ga--CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 122855 0.72 0.582398
Target:  5'- cGGCGGcgcCGAGgGCGCCgaGCGCCg- -3'
miRNA:   3'- -UCGCUuu-GCUUgUGCGGgaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 88031 0.72 0.582398
Target:  5'- cGGCGGugccugggGGCGGuccaguCACGCgCCUGCGCCg- -3'
miRNA:   3'- -UCGCU--------UUGCUu-----GUGCG-GGACGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.