miRNA display CGI


Results 101 - 120 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 83555 0.71 0.591634
Target:  5'- cGCGAAgaacucgGCGGGCGUGCCCgcgGCGCCc- -3'
miRNA:   3'- uCGCUU-------UGCUUGUGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 106902 0.71 0.592662
Target:  5'- cAGCGGcgcgcuggcGGCGAGCGCGCCCgcGgGCCc- -3'
miRNA:   3'- -UCGCU---------UUGCUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 23421 0.71 0.592662
Target:  5'- cGGCGAGGCGcuGCGCGUCgggGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCu-UGUGCGGga-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 2385 0.71 0.592662
Target:  5'- cAGCGGcgcgcuggcGGCGAGCGCGCCCgcGgGCCc- -3'
miRNA:   3'- -UCGCU---------UUGCUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 56053 0.71 0.592662
Target:  5'- gAGCGAuguuCGGGgGCGCCCUGgGCgaGc -3'
miRNA:   3'- -UCGCUuu--GCUUgUGCGGGACgCGgaC- -5'
23565 3' -56.1 NC_005261.1 + 62756 0.71 0.592662
Target:  5'- uAGCGGcccGCGccGC-CGCCCgGCGCCUGg -3'
miRNA:   3'- -UCGCUu--UGCu-UGuGCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 118852 0.71 0.592662
Target:  5'- cGCGGAggGCG-GCGCGCCCgcgGC-CCUGg -3'
miRNA:   3'- uCGCUU--UGCuUGUGCGGGa--CGcGGAC- -5'
23565 3' -56.1 NC_005261.1 + 86470 0.71 0.592662
Target:  5'- cGCGccguuGAUGGACGCGgCCgggccgGCGCCUGu -3'
miRNA:   3'- uCGCu----UUGCUUGUGCgGGa-----CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 127938 0.71 0.592662
Target:  5'- cGGCGAGGCGcuGCGCGUCgggGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCu-UGUGCGGga-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 21707 0.71 0.592662
Target:  5'- cGCGGAGCG-GCGgGCCUcGCGCCg- -3'
miRNA:   3'- uCGCUUUGCuUGUgCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 84219 0.71 0.592662
Target:  5'- cGCGAAGCGcuCGCGgCg-GCGCCUGu -3'
miRNA:   3'- uCGCUUUGCuuGUGCgGgaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 60957 0.71 0.598835
Target:  5'- aAGCGcAAugcagacgccgcccGCGAGCGCGCCCUuuugagcccggcuGCGCuCUGg -3'
miRNA:   3'- -UCGC-UU--------------UGCUUGUGCGGGA-------------CGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 125181 0.71 0.602956
Target:  5'- cGGCaGggGCGcGCGCgGCCCcGCGcCCUGg -3'
miRNA:   3'- -UCG-CuuUGCuUGUG-CGGGaCGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 46741 0.71 0.602956
Target:  5'- cGCGggGCGGGCgGCGgCCgcggcgGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUUG-UGCgGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 76593 0.71 0.602956
Target:  5'- gAGCGGGugGcGCGCGCgCUGcCGCCc- -3'
miRNA:   3'- -UCGCUUugCuUGUGCGgGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 117187 0.71 0.60708
Target:  5'- cGGCGggGCGGugacguucuccuaccGgCGCGCCC-GCuGCCUGg -3'
miRNA:   3'- -UCGCuuUGCU---------------U-GUGCGGGaCG-CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 11045 0.71 0.613272
Target:  5'- cGGCGGcacuCGGGCGcCGCCCagGCGCCg- -3'
miRNA:   3'- -UCGCUuu--GCUUGU-GCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 88819 0.71 0.613272
Target:  5'- cGGCGggGCGGcgGCGCGCgCCggcccgGCGUCg- -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCG-GGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 37146 0.71 0.613272
Target:  5'- gAGUGGcauggcaccAGCGcucGCGCGCgCUUGCGCCUGg -3'
miRNA:   3'- -UCGCU---------UUGCu--UGUGCG-GGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 31273 0.71 0.613272
Target:  5'- cGcCGAGGCgGAGCGCGCCCgggccgaggUGCGCgUGu -3'
miRNA:   3'- uC-GCUUUG-CUUGUGCGGG---------ACGCGgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.