miRNA display CGI


Results 121 - 140 of 528 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 38989 0.71 0.613272
Target:  5'- cGCGGcccGGCGGGCGCGaCgCCgacGCGCCUGc -3'
miRNA:   3'- uCGCU---UUGCUUGUGC-G-GGa--CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 115563 0.71 0.613272
Target:  5'- cGGCGGcacuCGGGCGcCGCCCagGCGCCg- -3'
miRNA:   3'- -UCGCUuu--GCUUGU-GCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 37146 0.71 0.613272
Target:  5'- gAGUGGcauggcaccAGCGcucGCGCGCgCUUGCGCCUGg -3'
miRNA:   3'- -UCGCU---------UUGCu--UGUGCG-GGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 11045 0.71 0.613272
Target:  5'- cGGCGGcacuCGGGCGcCGCCCagGCGCCg- -3'
miRNA:   3'- -UCGCUuu--GCUUGU-GCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 88819 0.71 0.613272
Target:  5'- cGGCGggGCGGcgGCGCGCgCCggcccgGCGUCg- -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCG-GGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 116485 0.71 0.621535
Target:  5'- gGGCGggGCGGGCGCGCgguauaaagaGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGgga-------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 70540 0.71 0.622569
Target:  5'- gGGCGAcGugGAcuucuugACGCGCUCaccGCGCCUGg -3'
miRNA:   3'- -UCGCU-UugCU-------UGUGCGGGa--CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 73541 0.71 0.623602
Target:  5'- cGGCGGccccgGGACGCGCCCgGUGCCg- -3'
miRNA:   3'- -UCGCUuug--CUUGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 92909 0.71 0.623602
Target:  5'- cAGCGAGACGAGggcCACGCC--GUGCCg- -3'
miRNA:   3'- -UCGCUUUGCUU---GUGCGGgaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 115994 0.71 0.623602
Target:  5'- cGCu-GACGAGC-CGCCCgagGCGgCCUGa -3'
miRNA:   3'- uCGcuUUGCUUGuGCGGGa--CGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 37688 0.71 0.623602
Target:  5'- cGCGAGGCGGACucggagaucgACGCgCUGgCGCCg- -3'
miRNA:   3'- uCGCUUUGCUUG----------UGCGgGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 54639 0.71 0.633939
Target:  5'- cGCGuGAUGAGCGCGCCCgcgGUGUUa- -3'
miRNA:   3'- uCGCuUUGCUUGUGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 64094 0.71 0.633939
Target:  5'- uGgGAGACGAACACcaGCaCCgGCGCCa- -3'
miRNA:   3'- uCgCUUUGCUUGUG--CG-GGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 130267 0.71 0.633939
Target:  5'- uGCGggGCGucccGCGCGCCCc-CGCCa- -3'
miRNA:   3'- uCGCuuUGCu---UGUGCGGGacGCGGac -5'
23565 3' -56.1 NC_005261.1 + 63042 0.71 0.633939
Target:  5'- cGGCGAGGCGGuCGCGCagCaGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUGCGg-GaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 108416 0.71 0.633939
Target:  5'- gAGCGcgGCGcGgGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUgUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 91276 0.71 0.633939
Target:  5'- cGGCGAcggcGCGGACugGCCCgcggGcCGCgUGa -3'
miRNA:   3'- -UCGCUu---UGCUUGugCGGGa---C-GCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 3899 0.71 0.633939
Target:  5'- gAGCGcgGCGcGgGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUgUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 29538 0.71 0.634973
Target:  5'- cGCGAAGCucGCGgGCCCggaccugcagcuggcGCGCCUGc -3'
miRNA:   3'- uCGCUUUGcuUGUgCGGGa--------------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 134055 0.71 0.634973
Target:  5'- cGCGAAGCucGCGgGCCCggaccugcagcuggcGCGCCUGc -3'
miRNA:   3'- uCGCUUUGcuUGUgCGGGa--------------CGCGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.