miRNA display CGI


Results 101 - 120 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 51190 0.66 0.860909
Target:  5'- uGGCGAcGCucGcCACGCCCccggGCGCgCUGc -3'
miRNA:   3'- -UCGCUuUGcuU-GUGCGGGa---CGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 231 0.66 0.860909
Target:  5'- cGCGGGccccGCGAGCGgGCCCggcugcggcgGCGgCUGc -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa---------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 83 0.66 0.860909
Target:  5'- gGGCGGGguGCgGGGCGCGCCCccGgGCCc- -3'
miRNA:   3'- -UCGCUU--UG-CUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 121908 0.66 0.860909
Target:  5'- uAGCu---CGucuGCGCGCCgUGCGCCg- -3'
miRNA:   3'- -UCGcuuuGCu--UGUGCGGgACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4930 0.66 0.860909
Target:  5'- cGCGGccGCGA--GCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUu-UGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 21869 0.66 0.860909
Target:  5'- cGCGcucGCGAacGCGCGCCCgcgGgGCCc- -3'
miRNA:   3'- uCGCuu-UGCU--UGUGCGGGa--CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 95413 0.66 0.860909
Target:  5'- cGGCGGAGCaGAACaACGCCacgCUG-GCCUc -3'
miRNA:   3'- -UCGCUUUG-CUUG-UGCGG---GACgCGGAc -5'
23565 3' -56.1 NC_005261.1 + 16476 0.66 0.860909
Target:  5'- cGGCGGGACGA---CGCCCUcgugGCGCaUGa -3'
miRNA:   3'- -UCGCUUUGCUuguGCGGGA----CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 36922 0.66 0.860909
Target:  5'- gGGcCGGGACGuACuccgGgGCCCUGCGCUg- -3'
miRNA:   3'- -UC-GCUUUGCuUG----UgCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 67289 0.66 0.860909
Target:  5'- cGGCGuucccGGCGGACGCGCag-GCGCUg- -3'
miRNA:   3'- -UCGCu----UUGCUUGUGCGggaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 67642 0.66 0.860909
Target:  5'- gGGCG-GGC--GCACGCCgCUGCGCUc- -3'
miRNA:   3'- -UCGCuUUGcuUGUGCGG-GACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 81583 0.66 0.860909
Target:  5'- uGGaaGAGCuccAGCGCGCCCcGCGUCUGg -3'
miRNA:   3'- -UCgcUUUGc--UUGUGCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 38343 0.66 0.860909
Target:  5'- -cUGggGCGcGCACGCCCaGCggGCCUu -3'
miRNA:   3'- ucGCuuUGCuUGUGCGGGaCG--CGGAc -5'
23565 3' -56.1 NC_005261.1 + 103872 0.67 0.853885
Target:  5'- cGGCGggGCGGcgccgccgggcgGCGCGCCaagccgggccacccGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU------------UGUGCGGga------------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 14278 0.67 0.853095
Target:  5'- cGCGGAGCGGGCGCuGCgCUG-GCUg- -3'
miRNA:   3'- uCGCUUUGCUUGUG-CGgGACgCGGac -5'
23565 3' -56.1 NC_005261.1 + 76639 0.67 0.853095
Target:  5'- gGGCGGGaggcugcccACGAACACGgCCaucaccaGCGCCa- -3'
miRNA:   3'- -UCGCUU---------UGCUUGUGCgGGa------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 109348 0.67 0.853095
Target:  5'- gGGCGcAGGCGGcgGCGUCC-GCGCCg- -3'
miRNA:   3'- -UCGC-UUUGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 45414 0.67 0.853095
Target:  5'- uGCGc-GCGGuccCACGCCCgcgcGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUu--GUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 70042 0.67 0.853095
Target:  5'- cGGCGggGgCGAGgGgGCCCgcgGCGCg-- -3'
miRNA:   3'- -UCGCuuU-GCUUgUgCGGGa--CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 121619 0.67 0.853095
Target:  5'- cGCGGAgcGCGggUAUaCCUucgGCGCCUGc -3'
miRNA:   3'- uCGCUU--UGCuuGUGcGGGa--CGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.